GenomoBase: an integrated resource for Genomoviridae genomics and metagenomics
Cardenas-Conejo, Y.
Show abstract
The family Genomoviridae comprises circular single-stranded DNA viruses reported from fungi, plants, animals and environmental samples. Although metagenomics has accelerated their discovery, genomic sequences, annotations and metadata remain dispersed across repositories. Here we present GenomoBase (https://www.genomobase.org), a curated resource that integrates genomic, ecological and bibliographic data for all 237 ICTV-recognized genomovirus species. GenomoBase incorporates Serratus-filtered SRA screening outputs, enabling prioritization of metagenomes for targeted re-analysis. As a proof of concept, a targeted bait-and-assemble workflow of one prioritized SRA run recovered two complete genomes, both below the 78% species demarcation threshold for genomoviruses. GenomoBase streamlines comparative analyses and metagenome-guided genome recovery.
Matching journals
The top 6 journals account for 50% of the predicted probability mass.
Similar papers in this journal
Similar papers in this journal
- Genetic diversity and cross-species transmissibility of bat-associated picornaviruses from Spain 95%
- Ever-increasing viral diversity associated with the red imported fire ant Solenopsis invicta (Formicidae: Hymenoptera) 94%
- Structural diversity and conservation among CRESS-DNA bacilladnaviruses revealed through cryo-EM and computational modelling 93%
Similar papers in this journal
- Individual bat viromes reveal the co-infection, spillover and emergence risk of potential zoonotic viruses 94%
- SARS-CoV-2 within-host population expansion, diversification and adaptation in zoo tigers, lions and hyenas 93%
- No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2 93%
Similar papers in this journal
- Deep mining of the Sequence Read Archive reveals bipartite coronavirus genomes and inter-family Spike glycoprotein recombination 96%
- A wide diversity of viruses detected in African mammals involved in the wild meat supply chain 95%
- Genomic transfers help to decipher the ancient evolution of filoviruses and interactions with vertebrate hosts 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.