Back

An Investigative study of methods for Retinal Image Registration

Dharmaseelan, T.; Sinha, N.; Chan, Y. W.; Ashraf, S.; Daneshvar, K.; Pontikos, N.

2025-12-02 ophthalmology
10.64898/2025.12.01.25341352 medRxiv
Show abstract

AimThis study aims to compare three deep learning-based retinal image registration methods RetinaRegNet, EyeLiner, and GeoFormer on the FIRE dataset to determine which approach provides optimal registration accuracy and computational efficiency across varying image overlap conditions (Classes S, A, and P) using mean landmark error as the primary outcome measure. MethodsThe three pipelines were evaluated under consistent conditions. RetinaRegNet incorporates diffusion features, dual keypoint sampling (SIFT and random), two stage outlier removal, and a multilevel registration hierarchy progressing from homography to polynomial transforms. EyeLiner integrates anatomical segmentation with SuperPoint feature extraction, LightGlue matching, and thin-plate spline warping. GeoFormer builds on LoFTR through cross-attention mechanisms and RANSAC-based refinement. Registration performance was quantified using mean landmark error (MLE). ResultsAcross all 134 FIRE image pairs, RetinaRegNet achieved the lowest overall MLE (3.12 pixels), outperforming EyeLiner (3.66 pixels) and GeoFormer (6.06 pixels). Class-specific analysis showed that RetinaRegNet delivered the highest accuracy in Class S images (1.70 pixels), competitive performance in Class A (5.24 pixels), and the strongest results in the most challenging Class P cases (4.57 pixels). GeoFormer demonstrated the shortest processing time at 0.32 seconds per image pair, compared with 4.92 seconds for EyeLiner and 31.23 seconds for RetinaRegNet. In Class P, RetinaRegNet achieved a 59.2% improvement in accuracy relative to GeoFormer (4.57 vs 11.20 pixels). DiscussionOverall, the evaluation reveals a clear trade-off between registration precision and computational speed. RetinaRegNet achieves the lowest MLE for complex clinical cases despite higher computational cost, EyeLiner balances precision and speed for routine use, while GeoFormer prioritizes rapid throughput where processing speed is critical.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Translational Vision Science & Technology
39 papers in training set
Top 0.1%
12.8%
2
PLOS ONE
5266 papers in training set
Top 16%
12.0%
3
Bioengineering
29 papers in training set
Top 0.1%
8.0%
4
Scientific Reports
3612 papers in training set
Top 7%
8.0%
5
Medical Image Analysis
35 papers in training set
Top 0.1%
6.8%
6
Eye
11 papers in training set
Top 0.1%
6.3%
50% of probability mass above
7
Frontiers in Neuroscience
256 papers in training set
Top 0.4%
5.5%
8
Ophthalmology Science
22 papers in training set
Top 0.1%
5.2%
9
PLOS Digital Health
106 papers in training set
Top 1%
4.9%
10
Biomedical Optics Express
95 papers in training set
Top 0.3%
4.4%
11
Computers in Biology and Medicine
128 papers in training set
Top 2%
2.4%
12
British Journal of Ophthalmology
14 papers in training set
Top 0.2%
2.1%
13
Photoacoustics
12 papers in training set
Top 0.2%
1.7%
14
Journal of Neural Engineering
221 papers in training set
Top 2%
1.1%
15
Brain Sciences
55 papers in training set
Top 1%
1.0%
16
IEEE Access
35 papers in training set
Top 1%
0.9%
17
Aperture Neuro
20 papers in training set
Top 0.5%
0.9%
18
DIGITAL HEALTH
17 papers in training set
Top 0.9%
0.9%
19
Scientific Data
209 papers in training set
Top 3%
0.9%
20
Human Brain Mapping
329 papers in training set
Top 4%
0.9%
21
BMJ Open
601 papers in training set
Top 13%
0.9%
22
Frontiers in Human Neuroscience
77 papers in training set
Top 2%
0.6%
23
Neuroinformatics
46 papers in training set
Top 1.0%
0.6%