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LandScape: a web application for interactive genomic summary visualization

Jia, W.; Li, H.; Li, S.; Li, S.

2019-12-06 bioinformatics
10.1101/866087 bioRxiv
Show abstract

SummaryVisualizing integrated-level data from genomic research remains a challenge, as it requires sufficient coding skills and experience. Here, we present LandScapeoviz, a web-based application for interactive and real-time visualization of summarized genetic information. LandScape utilizes a well-designed file format that is capable of handling various data types, and offers a series of built-in functions to customize the appearance, explore results, and export high-quality diagrams that are available for publication. Availability and implementationLandScape is deployed at bio.oviz.org/demo-project/analyses/landscape for online use. Documentation and demo data are freely available on this website and GitHub (github.com/Nobel-Justin/Oviz-Bio-demo). Contactshuaicli@cityu.edu.hk

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
BMC Bioinformatics
○ 457 papers in training set
Top 0.1%
19.0%
Similar papers in this journal
2
Bioinformatics
◐ 1204 papers in training set
Top 2%
12.2%
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3
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 0.2%
8.1%
Similar papers in this journal
4
GigaScience
◐ 212 papers in training set
Top 0.3%
6.9%
Similar papers in this journal
5
Briefings in Bioinformatics
◐ 354 papers in training set
Top 2%
5.0%
Similar papers in this journal
50% of probability mass above
6
iMeta
○ 10 papers in training set
Top 0.1%
4.2%
7
Database
◐ 61 papers in training set
Top 0.2%
3.3%
8
Scientific Reports
○ 3612 papers in training set
Top 30%
3.3%
9
PLOS ONE
● 5266 papers in training set
Top 40%
2.5%
10
Nucleic Acids Research
◐ 1281 papers in training set
Top 7%
2.2%
11
Journal of Genetics and Genomics
○ 38 papers in training set
Top 0.2%
1.8%
12
Informatics in Medicine Unlocked
○ 22 papers in training set
Top 0.6%
1.5%
13
Bioinformatics Advances
◐ 203 papers in training set
Top 3%
1.5%
14
PLOS Computational Biology
● 1863 papers in training set
Top 15%
1.5%
15
Patterns
○ 78 papers in training set
Top 2%
1.4%
16
SoftwareX
○ 15 papers in training set
Top 0.2%
1.2%
17
iScience
○ 1154 papers in training set
Top 29%
1.1%
18
Journal of Bioinformatics and Systems Biology
○ 15 papers in training set
Top 0.1%
1.1%
19
Computers in Biology and Medicine
○ 128 papers in training set
Top 4%
1.0%
20
PeerJ
◐ 308 papers in training set
Top 10%
0.9%
21
Genomics, Proteomics & Bioinformatics
188 papers in training set
Top 2%
0.9%
22
Frontiers in Genetics
○ 230 papers in training set
Top 6%
0.6%
23
Journal of Chemical Information and Modeling
● 238 papers in training set
Top 2%
0.6%
24
PROTEOMICS
○ 43 papers in training set
Top 0.8%
0.6%
25
BMC Medical Genomics
○ 50 papers in training set
Top 1%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.