Automated Quantification of Enlarged Perivascular Spaces in Clinical Brain MRI across Sites
Dubost, F.; Duennwald, M.; Huff, D.; Scheumann, V.; Schreiber, F.; Vernooij, M.; Niessen, W.; Skalej, M.; Schreiber, S.; Oeltze-Jafra, S.; de Bruijne, M.
Show abstract
Enlarged perivascular spaces (PVS) are structural brain changes visible in MRI, and are a marker of cerebral small vessel disease. Most studies use time-consuming and subjective visual scoring to assess these structures. Recently, automated methods to quantify enlarged perivascular spaces have been proposed. Most of these methods have been evaluated only in high resolution scans acquired in controlled research settings. We evaluate and compare two recently published automated methods for the quantification of enlarged perivascular spaces in 76 clinical scans acquired from 9 different scanners. Both methods are neural networks trained on high resolution research scans and are applied without fine-tuning the networks parameters. By adapting the preprocessing of clinical scans, regions of interest similar to those computed from research scans can be processed. The first method estimates only the number of PVS, while the second method estimates simultaneously also a high resolution attention map that can be used to detect and segment PVS. The Pearson correlations between visual and automated scores of enlarged perivascular spaces were higher with the second method. With this method, in the centrum semiovale, the correlation was similar to the inter-rater agreement, and also similar to the performance in high resolution research scans. Results were slightly lower than the inter-rater agreement for the hippocampi, and noticeably lower in the basal ganglia. By computing attention maps, we show that the neural networks focus on the enlarged perivascular spaces. Assessing the burden of said structures in the centrum semiovale with the automated scores reached a satisfying performance, could be implemented in the clinic and, e.g., help predict the bleeding risk related to cerebral amyloid angiopathy.
Matching journals
The top 7 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Deep Bayesian networks for uncertainty estimation and adversarial resistance of white matter hyperintensity segmentation 97%
- OpenMAP-T1: A Rapid Deep Learning Approach to Parcellate 280 Anatomical Regions to Cover the Whole Brain 96%
- Performance of three freely available methods for extracting white matter hyperintensities: FreeSurfer, UBO Detector and BIANCA 96%
Similar papers in this journal
- Vessel Density Mapping of Cerebral Small Vessels on 3D High Resolution Black Blood MRI 96%
- A preliminary attempt to harmonize using physics-constrained deep neural networks for multisite and multiscanner MRI datasets (PhyCHarm) 96%
- Subcortical Segmentation of the Fetal Brain in 3D Ultrasound using Deep Learning 96%
Similar papers in this journal
- Anisotropy Measure from Three Diffusion-Encoding Gradient Directions 95%
- Estimation of in-scanner head pose changes during structural MRI using a convolutional neural network trained on eye tracker video 95%
- MidRISH: Unbiased harmonization of rotationally invariant harmonics of the diffusion signal 94%
Similar papers in this journal
- Freewater EstimatoR using iNtErpolated iniTialization (FERNET): Toward Accurate Estimation of Free Water in Peritumoral Region Using Single-Shell Diffusion MRI Data 95%
- 3 versus 7 Tesla Magnetic Resonance Imaging for parcellations of subcortical brain structures 94%
- Eigenvector alignment: assessing functional network changes in amnestic mild cognitive impairment and Alzheimer's disease 94%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.