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HeveaDB: a genetic resource database for rubber tree genomic study

Cheng, H.; Xia, Y.; Zhou, J.; Tang, C.; Huang, H.

2019-07-30 bioinformatics
10.1101/708305 bioRxiv
Show abstract

With the proceedings in the genome study in rubber tree, more and more data were produced. However, these data are still deposited in public databases as raw format, and the utilization of these NGS data is hindered for the researchers in rubber tree community. HeveaDB was therefore constructed and maintained under the organization of International Rubber Research and Development Board. The HeveaDB 1.0 (http://hevea.catas.cn) mainly stores 4 versions of Hevea draft genome, 99 NGS transcriptomes, 18451annotated EST sequences, 12 curated gene families, 30200 gene annotations, 5049 wild germplasm phenotype data, and 18328 Wickham rubber clonal information. Several bioinformatic tools are integrated in the database to facilitate the utilization of the data for the users who are not skilled in bioinformatics. With the periodical update and functional improvement, the HeveaDB will serve as a potential platform for genomic studies and breeding technology in rubber tree.

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