Back

A solvable model of entrainment ranges for the circadian rhythm under light/dark cycles

Takakura, R.; Ichikawa, M.; Oyama, T.

2019-07-11 biophysics
10.1101/683615 bioRxiv
Show abstract

A continuous model for entrainment of the circadian clock responding to light/dark cycles is analytically studied. The circadian rhythm is entrained to light/dark cycles in a certain range of periods including the 24 hour period. Entrainment ranges vary among organisms; plants show much larger ranges than mammals. To analyze entrainment manners, we exploit a simplified model in which the angular velocity of the circadian rhythm is modulated by a sinusoidal function of phase difference between the circadian rhythm and reference phases. This model contains only one parameter called entrainment strength (K). For light and dark states, we set two reference phases. Using this model, we characterized the entrainment manners of circadian rhythms under non-24 hour light/dark cycles. The conditions of the K value for the entrainment were analytically calculated and a phase diagram showing entrainment/non-entrainment boundaries was drawn. In the diagram we found a region where disordered orbitals emerge. Then, critical values for the entrainment and the disordered irregular motion of the oscillation were derived. Simulation results near a critical value were comparable with the experimental results of the entrainment manners of plant circadian rhythms, suggesting the compatibility of self-oscillation and a strong light/dark response in plants. The diagram clearly represents an overview of the relationship between entrainment strengths and entrainment manners of circadian rhythms in general, and enables us to uniformly compare strengths of periodic stimuli in the environment and degrees of responsiveness for the stimuli among various circadian rhythms.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
PLOS ONE
5266 papers in training set
Top 12%
15.4%
2
Biosystems
31 papers in training set
Top 0.1%
12.1%
3
Physical Review E
112 papers in training set
Top 0.1%
12.1%
4
Biophysical Journal
631 papers in training set
Top 2%
4.9%
5
Chaos, Solitons & Fractals
32 papers in training set
Top 0.2%
4.1%
6
Scientific Reports
3612 papers in training set
Top 25%
4.1%
50% of probability mass above
7
PLOS Computational Biology
1863 papers in training set
Top 10%
3.3%
8
Biophysics and Physicobiology
11 papers in training set
Top 0.1%
3.2%
9
Physica A: Statistical Mechanics and its Applications
13 papers in training set
Top 0.1%
3.2%
10
Frontiers in Physiology
106 papers in training set
Top 0.6%
2.8%
11
Physical Biology
46 papers in training set
Top 0.3%
2.2%
12
Cognitive Neurodynamics
18 papers in training set
Top 0.1%
1.8%
13
Physical Review Research
49 papers in training set
Top 0.5%
1.7%
14
The Journal of Physical Chemistry B
167 papers in training set
Top 1%
1.5%
15
International Journal of Molecular Sciences
494 papers in training set
Top 11%
1.1%
16
npj Systems Biology and Applications
125 papers in training set
Top 1%
1.1%
17
Journal of The Royal Society Interface
235 papers in training set
Top 3%
1.1%
18
Mathematical Biosciences
49 papers in training set
Top 1%
0.9%
19
Frontiers in Plant Science
256 papers in training set
Top 4%
0.9%
20
PeerJ
308 papers in training set
Top 11%
0.9%
21
Life
29 papers in training set
Top 0.8%
0.9%
22
Neuroscience Research
16 papers in training set
Top 0.1%
0.9%
23
Nonlinear Dynamics
10 papers in training set
Top 0.4%
0.6%
24
Chaos: An Interdisciplinary Journal of Nonlinear Science
17 papers in training set
Top 0.4%
0.6%
25
The European Physical Journal Plus
13 papers in training set
Top 0.4%
0.6%
26
FASEB BioAdvances
18 papers in training set
Top 0.5%
0.6%