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igv-reports: Embedding interactive genomic visualizations in HTML reports to aid variant review

Robinson, J. T.; Thorvaldsdottir, H.; Mesirov, J. P.

2025-10-31 bioinformatics
10.1101/2025.10.29.685397 bioRxiv
Show abstract

We present igv-reports, a command-line tool to create standalone HTML pages embedding interactive genomic visualizations of read alignments and associated annotations to support variant inspection workflows. The reports contain all data and code required for visualization of the variant sites, with no dependencies on the input data files.

Published in Bioinformatics (predicted rank #2) · training set

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"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.