Back

Development and implementation of a nowcasting method for the syndromic surveillance of severe acute respiratory infections (SARI) in Germany

Günther, F.; Tolksdorf, K.; Reinacher, U.; Schuler, E.; Buda, S.; Sandmann, F.

2025-10-31 epidemiology
10.1101/2025.10.28.25338979 medRxiv
Show abstract

BackgroundIn Germany, diagnosis-based hospital surveillance of severe acute respiratory infections (SARI) incidence is operated weekly. However, diagnosis data from the most recent weeks is provisional and may be subject to systematic changes that we wish to account for to achieve a timely assessment of SARI trends. MethodsWe developed a novel nowcasting method based on (i) the already available data for the current week and (ii) historic changes in the data in weeks following initial reporting. The available weekly data were rescaled using multiplicative factors based on the historic patterns, to obtain the expected final incidence. We fit a parametric Beta distribution for observed upward changes in reported incidence, and a mixture distribution in case of the existence of downward changes, e.g., due to later corrections in diagnoses. We evaluated the model performance for the respiratory winter season 2024/2025. ResultsThe average weekly SARI incidence upon initial estimation in the first week after hospitalisation was 79.4% (median) of the incidence five weeks after hospitalisation, which was considered final. It increased to 95.1% in the second week after hospitalisation. The nowcast predictions matched the final incidences well and were able to indicate trends in real-time. Prediction intervals were well-calibrated and nowcasting can be performed in subgroups given sufficient case numbers. ConclusionsThe SARI surveillance in Germany achieved a high completeness already in the initial weeks after hospitalisation. The newly-developed nowcasting method yielded robust results with reliable uncertainty quantification. In combination, this facilitates a close to real-time assessment of SARI hospitalisation incidence in Germany.

Matching journals

The top 9 journals account for 50% of the predicted probability mass.

1
Swiss Medical Weekly
12 papers in training set
Top 0.1%
8.4%
2
Eurosurveillance
80 papers in training set
Top 0.1%
6.8%
3
Scientific Reports
3102 papers in training set
Top 14%
6.8%
4
BMC Medical Research Methodology
43 papers in training set
Top 0.1%
6.8%
5
BMC Infectious Diseases
118 papers in training set
Top 0.5%
4.9%
6
BMC Medicine
163 papers in training set
Top 0.9%
4.4%
7
Nature Communications
4913 papers in training set
Top 35%
4.3%
8
PLOS Computational Biology
1633 papers in training set
Top 8%
4.3%
9
International Journal of Medical Informatics
25 papers in training set
Top 0.4%
3.6%
50% of probability mass above
10
PLOS ONE
4510 papers in training set
Top 39%
3.6%
11
Journal of Infection
71 papers in training set
Top 0.6%
3.1%
12
European Respiratory Journal
54 papers in training set
Top 0.6%
2.5%
13
Journal of Medical Internet Research
85 papers in training set
Top 2%
2.4%
14
Epidemiology and Infection
84 papers in training set
Top 1%
2.1%
15
Frontiers in Public Health
140 papers in training set
Top 4%
1.9%
16
Wellcome Open Research
57 papers in training set
Top 0.7%
1.9%
17
Transboundary and Emerging Diseases
34 papers in training set
Top 0.3%
1.8%
18
Epidemics
104 papers in training set
Top 0.9%
1.8%
19
International Journal of Epidemiology
74 papers in training set
Top 1%
1.7%
20
Clinical Infectious Diseases
231 papers in training set
Top 3%
1.5%
21
Diagnostics
48 papers in training set
Top 1%
1.2%
22
Frontiers in Medicine
113 papers in training set
Top 5%
1.0%
23
International Journal of Environmental Research and Public Health
124 papers in training set
Top 6%
0.9%
24
Influenza and Other Respiratory Viruses
44 papers in training set
Top 0.3%
0.9%
25
Journal of Clinical Medicine
91 papers in training set
Top 5%
0.9%
26
The Lancet Digital Health
25 papers in training set
Top 1%
0.7%
27
PLOS Biology
408 papers in training set
Top 21%
0.7%
28
American Journal of Epidemiology
57 papers in training set
Top 2%
0.7%
29
Archives of Clinical and Biomedical Research
28 papers in training set
Top 3%
0.7%
30
BMJ
49 papers in training set
Top 1%
0.6%