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Brain-age in ultra-low-field MRI: how well does it work?

Biondo, F.; Bennallick, C.; Martin, S. A.; Puglisi, L.; Booth, T. C.; Wood, D. A.; Iglesias, J. E.; Vasa, F.; Cole, J. H.

2025-10-20 health informatics
10.1101/2025.10.19.25338298 medRxiv
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IntroductionBrain-age is an estimate of the brains biological age derived from neuroimaging data, and has been proposed as a biomarker of brain health and disease risk. While brain-age estimation commonly uses high-field (HF) magnetic resonance imaging (MRI) (> 1.5 T) this is costly and inaccessible, limiting its applicability. Emerging ultra-low-field (ULF) MRI (< 0.1 T) technology is a cheaper and more accessible alternative, but its lower resolution raises questions about whether biomarkers like brain-age can be estimated reliably. MethodsWe assessed different brain-age pipelines in 23 adults scanned on one HF system (GE Signa Premier at 3 T) and two identical ULF systems (Hyperfine Swoop at 64 mT). 14 distinct acquisitions were used, defined by T1-or T2-weighting, resolution, and preprocessing: raw anisotropic orientations (axial, coronal, sagittal), isotropic scans, and super-resolution derivatives from multi-resolution registration (MRR) and SynthSR. These inputs (a total of n = 573 scans) were analysed with five brain-age software packages (BrainageR, SynthBA, MIDI, DeepBrainNet, Py-BrainAge). Performance evaluation entailed validity (brain-age vs. actual age), correspondence (ULF brain-age vs. HF brain-age), and test-retest reliability (ULF1 brain-age vs. ULF2 brain-age). ResultsOverall, performance was mixed across pipelines, though several ULF pipelines achieved performance comparable to HF. The four best-performing combinations were SynthBA on T2 scans without SynthSR, MIDI on T2 scans without SynthSR, PyBrainAge on T1 scans with SynthSR and using FreeSurfer recon-all-clinical, and BrainageR on T1 scans with SynthSR. These showed moderate-to- strong validity (r = 0.76-0.92, R2 = 0.54-0.64, MAE = 6.49-8.21 years), moderate- to-strong correspondence to HF (r = 0.84-0.93, ICC = 0.72-0.92), and excellent test-retest reliability (r = 0.97-0.99, ICC = 0.97-0.99). Moreover, some anisotropic acquisitions achieved comparable validity and reliability to MRR images when tested with the best-performing model, SynthBA (R2 = 0.57-0.62, ICC [CI] = 0.99 [0.97- 1.00], for coronal T2). ConclusionThis first systematic evaluation of brain-age at ULF demonstrates that accurate and reliable estimates can be achieved across multiple pipelines, with- out necessarily requiring image enhancement. Performance depended on the combination of model, scan type, and preprocessing. ULF brain-age estimation could be a practical and scalable tool for clinical decision-making, population research, and long-term patient monitoring, thereby helping to make advanced neuroimaging biomarkers more accessible worldwide.

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