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ChromPhaser: A HiFi Read Phasing Framework Integrating SNPmers and Hi-C Data

Yang, Z.; Sun, Z.; Wu, L.; Tian, X.; Jia, G.; Dudchenko, O.; Zheng, J.; Zhao, S.; Aiden, E. L.

2025-10-15 genomics
10.1101/2025.10.15.681968 bioRxiv
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Withdrawal StatementThe authors have withdrawn this manuscript because [I didnt get the approval of all authors]. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Genome Biology
○ 637 papers in training set
Top 0.2%
22.7%
Similar papers in this journal
2
Bioinformatics
◐ 1204 papers in training set
Top 2%
12.9%
Similar papers in this journal
3
Nucleic Acids Research
◐ 1281 papers in training set
Top 3%
6.8%
Similar papers in this journal
4
GigaScience
◐ 212 papers in training set
Top 0.3%
6.8%
Similar papers in this journal
5
BMC Bioinformatics
○ 457 papers in training set
Top 1%
6.8%
Similar papers in this journal
50% of probability mass above
6
BMC Genomics
○ 406 papers in training set
Top 0.9%
5.6%
7
NAR Genomics and Bioinformatics
◐ 242 papers in training set
Top 1%
4.1%
8
PLOS ONE
● 5266 papers in training set
Top 35%
3.3%
9
Bioinformatics Advances
◐ 203 papers in training set
Top 2%
2.5%
10
Nature Communications
○ 5641 papers in training set
Top 41%
2.2%
11
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 3%
1.9%
12
Methods
○ 34 papers in training set
Top 0.2%
1.9%
13
Genome Research
● 468 papers in training set
Top 4%
1.5%
14
PLOS Computational Biology
● 1863 papers in training set
Top 16%
1.4%
15
G3: Genes, Genomes, Genetics
◐ 252 papers in training set
Top 3%
1.4%
16
Molecular Biology and Evolution
◐ 542 papers in training set
Top 4%
1.1%
17
GENETICS
◐ 483 papers in training set
Top 3%
1.1%
18
Nature Methods
○ 385 papers in training set
Top 6%
1.1%
19
Human Mutation
○ 34 papers in training set
Top 0.4%
1.0%
20
Scientific Reports
○ 3612 papers in training set
Top 68%
1.0%
21
Frontiers in Genetics
○ 230 papers in training set
Top 5%
0.9%
22
Communications Biology
○ 993 papers in training set
Top 34%
0.6%
23
Genes
○ 144 papers in training set
Top 4%
0.6%
24
PeerJ
◐ 308 papers in training set
Top 12%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.