Back

Enhancing Medical Image Segmentation through Negative Sample Integration: A Study on Kvasir-SEG and Augmented Datasets

Mahbub, I.; Zim, A. Z.; Imran, T. B.; Mesbah, K. M. F.; Shawon, M. H.; Jobayer, M.

2025-10-14 bioengineering
10.1101/2025.10.14.682445 bioRxiv
Show abstract

Colorectal cancer (CRC) remains a leading cause of cancer-related mortality worldwide, with early and accurate detection being critical for improving patient outcomes. Automated image segmentation using deep learning has emerged as a transformative tool for identifying colorectal abnormalities in medical imaging. This study conducts a comparative analysis of three prominent deep learning architectures--U-Net, SegNet, and ResNet--for colorectal cancer image segmentation, evaluating their performance on a custom dataset comprising 1,800 images (1,000 polyp images from the Kvasir-SEG dataset and 800 polyp-free images from the WCE Curated Colon Dataset). The dataset was preprocessed to a uniform resolution of 256 x 256 pixels and partitioned into training, validation, and test sets. Quantitative and qualitative results demonstrate that U-Net outperforms SegNet and ResNet, achieving superior segmentation accuracy (validation accuracy of 0.95) and robustness, particularly when trained on datasets that include negative samples. SegNet showed the sign of overfitting and delivered unstable results, while ResNet struggled to generalize effectively. The integration of negative images improved specificity by decreasing false positive rates. Overall, the results demonstrate U-net as the most efficient in precise polyp segmentation, providing significant implications for robust diagnostic system development.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
IEEE Access
31 papers in training set
Top 0.1%
12.4%
2
Scientific Reports
3102 papers in training set
Top 6%
10.1%
3
PLOS ONE
4510 papers in training set
Top 25%
6.8%
4
Computers in Biology and Medicine
120 papers in training set
Top 0.5%
4.9%
5
npj Digital Medicine
97 papers in training set
Top 0.9%
4.9%
6
IEEE Transactions on Medical Imaging
18 papers in training set
Top 0.1%
4.3%
7
Bioengineering
24 papers in training set
Top 0.1%
3.6%
8
IEEE Transactions on Biomedical Engineering
38 papers in training set
Top 0.3%
3.6%
50% of probability mass above
9
Sensors
39 papers in training set
Top 0.6%
3.1%
10
Photoacoustics
11 papers in training set
Top 0.1%
2.6%
11
Medical Physics
14 papers in training set
Top 0.3%
2.1%
12
Journal of Medical Imaging
11 papers in training set
Top 0.1%
2.1%
13
npj Precision Oncology
48 papers in training set
Top 0.4%
1.9%
14
Human Brain Mapping
295 papers in training set
Top 3%
1.8%
15
European Radiology
14 papers in training set
Top 0.4%
1.7%
16
PLOS Computational Biology
1633 papers in training set
Top 16%
1.7%
17
Computer Methods and Programs in Biomedicine
27 papers in training set
Top 0.4%
1.5%
18
Biomedical Optics Express
84 papers in training set
Top 0.7%
1.5%
19
Medical Image Analysis
33 papers in training set
Top 0.7%
1.3%
20
Nature Medicine
117 papers in training set
Top 3%
1.3%
21
Frontiers in Bioinformatics
45 papers in training set
Top 0.4%
1.3%
22
Neurocomputing
13 papers in training set
Top 0.3%
1.2%
23
Advanced Science
249 papers in training set
Top 14%
1.2%
24
Diagnostics
48 papers in training set
Top 2%
1.0%
25
Annals of Biomedical Engineering
34 papers in training set
Top 1%
0.9%
26
Cancers
200 papers in training set
Top 4%
0.9%
27
BMC Medical Informatics and Decision Making
39 papers in training set
Top 2%
0.9%
28
BMC Bioinformatics
383 papers in training set
Top 6%
0.8%
29
Plant Phenomics
17 papers in training set
Top 0.3%
0.8%
30
Computational and Structural Biotechnology Journal
216 papers in training set
Top 8%
0.8%