Back

Independence-based causal discovery analysis reveals statistically non-significant regions to be functionally significant

Lewis, M. T.; Eack, S.; Theis, N.; Keshavan, M. S.; Prasad, K. M.

2025-06-25 neuroscience
10.1101/2025.06.19.660609 bioRxiv
Show abstract

Background and HypothesisTraditional fMRI analyses often ignore regions that fail to reach statistical significance, assuming they are biologically unimportant. We tested the accuracy of this assumption using causal discovery based-analysis that go beyond associations/correlations to test the causality of one regions influence over the other. We hypothesized that the network of statistically significant (active network, AN) and non-significant regions (silent network, SN) causally interact and their features will causally influence psychopathology severity and working memory performance. Study DesignWe examined AN and SN during N-BACK task on 25 FHR and 37 controls. Clusters with significantly different activations were juxtaposed to 360 Glasser atlas parcellations. The PC algorithm for causal discovery was implemented. Connectivity of regions with the highest alpha-centrality (HAC) were examined. ResultsSeventy-seven Glasser regions were in the AN and the rest were silent nodes. Two regions showed HAC for FHR and HC. Among controls, one HAC region was silent (auditory association cortex) and the other one was active (insula). Among FHR, both were silent nodes (early auditory cortex). These HAC regions in both groups had bidirectional directed edges between each other forming a reciprocal circuit whose edge-weights causally "increased" magical ideation severity. ConclusionCausal connectivity between SN and AN suggests that the statistically non-significant and significant regions influence each other. Our findings question the merit of ignoring statistically non-significant regions and exclusively including statistically significant regions in the pathophysiological models. Our study suggests that causality analysis should receive greater attention.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Human Brain Mapping
295 papers in training set
Top 0.4%
14.1%
2
Brain Imaging and Behavior
14 papers in training set
Top 0.1%
9.9%
3
PLOS ONE
4510 papers in training set
Top 29%
6.2%
4
Frontiers in Psychiatry
83 papers in training set
Top 0.6%
6.2%
5
Scientific Reports
3102 papers in training set
Top 25%
4.8%
6
NeuroImage: Clinical
132 papers in training set
Top 0.9%
4.8%
7
NeuroImage
813 papers in training set
Top 3%
3.5%
8
Frontiers in Human Neuroscience
67 papers in training set
Top 0.6%
3.0%
50% of probability mass above
9
Neuroimage: Reports
22 papers in training set
Top 0.1%
2.4%
10
Brain and Behavior
37 papers in training set
Top 0.4%
1.9%
11
Brain Connectivity
22 papers in training set
Top 0.1%
1.7%
12
Frontiers in Neuroimaging
11 papers in training set
Top 0.2%
1.7%
13
Journal of Cognitive Neuroscience
119 papers in training set
Top 0.9%
1.7%
14
Journal of Affective Disorders
81 papers in training set
Top 1%
1.7%
15
eneuro
389 papers in training set
Top 6%
1.6%
16
Frontiers in Neuroscience
223 papers in training set
Top 4%
1.5%
17
Neuroscience Letters
28 papers in training set
Top 0.5%
1.5%
18
Biological Psychiatry: Cognitive Neuroscience and Neuroimaging
62 papers in training set
Top 1%
1.3%
19
Neuropsychologia
77 papers in training set
Top 0.8%
1.3%
20
Neuroscience & Biobehavioral Reviews
43 papers in training set
Top 0.6%
1.2%
21
Psychological Medicine
74 papers in training set
Top 1%
1.2%
22
Communications Biology
886 papers in training set
Top 16%
1.1%
23
Cerebral Cortex
357 papers in training set
Top 2%
0.9%
24
Journal of Neuroscience Research
25 papers in training set
Top 0.4%
0.9%
25
Aperture Neuro
18 papers in training set
Top 0.3%
0.9%
26
Frontiers in Aging Neuroscience
67 papers in training set
Top 3%
0.8%
27
Brain Sciences
52 papers in training set
Top 2%
0.8%
28
Frontiers in Neurology
91 papers in training set
Top 5%
0.7%
29
Frontiers in Systems Neuroscience
19 papers in training set
Top 0.5%
0.7%
30
Psychiatry Research: Neuroimaging
16 papers in training set
Top 0.3%
0.7%