Back

Regression-based modeling of pairwise genomic linkage data identifies risk factors for healthcare-associated infection transmission: Application to carbapenem-resistant Klebsiella pneumoniae transmission in a long-term care facility

2025-05-06 epidemiology Title + abstract only
View on medRxiv
Show abstract

BackgroundPathogen whole genome sequencing (WGS) has significant potential for improving healthcare-associated infection (HAI) outcomes. However, methods for integrating WGS with epidemiologic data to quantify risks for pathogen spread remain underdeveloped. MethodsTo identify analytic strategies for conducting WGS-based HAI surveillance in high-burden settings, we modeled patient- and facility-level transmission risks of carbapenem-resistant Klebsiella pneumoniae (CRKP) in a long-term acute ca...

Predicted journal destinations

1
Nature Communications
483 training papers
Top 8% 10.9%
2
Scientific Reports
701 training papers
Top 46% 5.9%
3
PLOS Computational Biology
141 training papers
Top 3% 5.9%
4
Clinical Infectious Diseases
219 training papers
Top 5% 5.9%
5
Genome Medicine
56 training papers
Top 2% 5.5%
6
Microbial Genomics
24 training papers
#1 5.5%
7
eLife
262 training papers
Top 6% 5.5%
8
Epidemics
96 training papers
Top 4% 3.9%
9
The Journal of Infectious Diseases
137 training papers
Top 4% 3.6%
10
PLOS ONE
1737 training papers
Top 91% 2.6%
11
BMC Medicine
155 training papers
Top 14% 1.8%
12
Science
46 training papers
Top 2% 1.8%
13
BMC Infectious Diseases
110 training papers
Top 9% 1.8%
14
Proceedings of the National Academy of Sciences
100 training papers
Top 7% 1.8%
15
American Journal of Epidemiology
54 training papers
Top 5% 1.4%
16
Journal of Infection
64 training papers
Top 5% 1.2%
17
The Lancet Microbe
33 training papers
Top 1.0% 1.2%
18
International Journal of Epidemiology
65 training papers
Top 8% 1.2%
19
Eurosurveillance
77 training papers
Top 8% 1.2%
20
Epidemiology and Infection
80 training papers
Top 10% 1.2%
21
Emerging Infectious Diseases
84 training papers
Top 11% 1.2%
22
Journal of The Royal Society Interface
54 training papers
Top 4% 1.1%
23
Open Forum Infectious Diseases
124 training papers
Top 13% 1.1%
24
Journal of Clinical Microbiology
77 training papers
Top 6% 1.1%
25
Nature
58 training papers
Top 9% 0.9%
26
Nature Medicine
88 training papers
Top 15% 0.9%
27
Science Advances
52 training papers
Top 7% 0.7%
28
Epidemiology
26 training papers
Top 4% 0.7%
29
BMC Medical Research Methodology
41 training papers
Top 11% 0.7%
30
JAMA Network Open
125 training papers
Top 34% 0.7%