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From Spreadsheets and Bespoke Models to Enterprise Data Warehouses: GPT-enabled Clinical Data Ingestion into i2b2
2025-04-19
health informatics
Title + abstract only
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AO_SCPLOWBSTRACTC_SCPLOWO_ST_ABSObjectiveC_ST_ABSClinical and phenotypic data available to researchers are often found in spreadsheets or bespoke data models. Bridging these to enterprise data warehouses would enable sophisticated analytics and cohort discovery for users of platforms like NHGRIs Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVlL). We combine data mapping methodologies, biomedical ontologies, and large language models (LLMs) to load these data into Inf...
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