Back

Acoustic pH sensor for dynamic ultrasound imaging of cellular acidification

Terwiel, D.; Park, B. M.; Heiles, B.; Waasdorp, R.; Munoz-Ibarra, E.; Ara, T.; Gazzola, V.; Maresca, D.

2025-01-27 bioengineering
10.1101/2025.01.24.634762 bioRxiv
Show abstract

Genetically encoded pH sensors based on fluorescent proteins enable dynamic optical imaging of cellular processes such as endocytosis and exocytosis. To date, light scattering in thick tissue as well as photobleaching of fluorescent proteins prevent deep cellular imaging over sustained periods of time. To visualize intracellular pH variations across opaque organs, we introduce a genetically encoded acoustic pH sensor dubbed pHonon. We modified the outer gas vesicle protein (GvpC) of echogenic protein nanostructures via histidine point mutations. At low pH, engineered gas vesicles exhibit an increased shell stiffness which switched their acoustic response from nonlinear to linear. By combining pHonons with nonlinear ultrasound imaging, we captured dynamic deep tissue images of lysosomal acidification by macrophages in murine liver. The combination of pHonon with nonlinear ultrasound creates the possibility for basic studies of endo- and exocytic activity in deep tissue of living opaque organisms.

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
Nano Letters
63 papers in training set
Top 0.1%
37.2%
2
ACS Nano
99 papers in training set
Top 0.3%
8.3%
3
Nature Communications
4913 papers in training set
Top 23%
8.3%
50% of probability mass above
4
Advanced Science
249 papers in training set
Top 3%
6.3%
5
Science Advances
1098 papers in training set
Top 4%
4.1%
6
Advanced Materials
53 papers in training set
Top 0.8%
3.0%
7
Advanced Functional Materials
41 papers in training set
Top 1.0%
2.4%
8
Nature Nanotechnology
30 papers in training set
Top 0.5%
2.3%
9
ACS Photonics
13 papers in training set
Top 0.2%
2.3%
10
Nature Methods
336 papers in training set
Top 4%
1.8%
11
ACS Sensors
45 papers in training set
Top 0.8%
1.7%
12
Journal of the American Chemical Society
199 papers in training set
Top 3%
1.7%
13
Angewandte Chemie International Edition
81 papers in training set
Top 2%
1.5%
14
Light: Science & Applications
16 papers in training set
Top 0.4%
1.5%
15
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 35%
1.5%
16
Optica
25 papers in training set
Top 0.6%
1.3%
17
Nature Biotechnology
147 papers in training set
Top 5%
1.3%
18
Small
70 papers in training set
Top 0.8%
1.2%
19
Nature Materials
21 papers in training set
Top 0.7%
1.1%
20
Nature Biomedical Engineering
42 papers in training set
Top 1%
0.9%
21
Nanoscale
39 papers in training set
Top 0.4%
0.7%
22
Communications Biology
886 papers in training set
Top 25%
0.7%
23
Scientific Reports
3102 papers in training set
Top 75%
0.7%
24
Cell Systems
167 papers in training set
Top 14%
0.6%
25
Neurophotonics
37 papers in training set
Top 0.8%
0.6%
26
The Journal of Physical Chemistry B
158 papers in training set
Top 2%
0.6%