Back

ViFIT-assisted Histopathology: From H&E Style Standardization to Virtual Fiber Image Transformation

Wang, S.; Zhang, X.; Wang, X.; Lv, C.; Han, X.; Lin, X.; Kang, D.; Lin, R.; Hu, L.; Huang, F.; Liu, W.; Chen, J.

2025-01-26 pathology
10.1101/2025.01.24.634654 bioRxiv
Show abstract

Deep learning-based virtual fiber staining provides a promising complement to routine H&E pathology. However, the reliance on predefined staining style inputs and manual intervention limits the clinical applicability of existing methods. To address these challenges, we introduce ViFIT-assisted histopathology, a two-stage diagnostic approach that integrates our proposed unsupervised deep learning-based virtual fiber transformation model (ViFIT). This approach enables the conversion of H&E-stained images with diverse styles into pathologist-preferred H&E images, while simultaneously generating content-consistent virtual fiber images containing label-free collagen fibers and stained reticular and elastic fibers. ViFIT-assisted histopathology reveals tumor-associated fibers and provides quantitative metrics across multiple intraoperative and postoperative cases. Experimental results demonstrate that ViFIT significantly outperforms state-of-the-art unsupervised methods in both style standardization and virtual staining, across various downstream tasks and cancer types. By eliminating the need for staining variation and manual annotation, ViFIT-assisted histopathology streamlines histopathology workflows, making it well-suited for multi-center consultations and differential diagnosis.

Matching journals

The top 3 journals account for 50% of the predicted probability mass.

1
Modern Pathology
21 papers in training set
Top 0.1%
24.2%
2
Journal of Pathology Informatics
13 papers in training set
Top 0.1%
24.2%
3
Nature Communications
4913 papers in training set
Top 34%
4.6%
50% of probability mass above
4
Medical Image Analysis
33 papers in training set
Top 0.3%
4.5%
5
Scientific Reports
3102 papers in training set
Top 43%
2.8%
6
npj Digital Medicine
97 papers in training set
Top 2%
2.5%
7
Journal of Medical Imaging
11 papers in training set
Top 0.1%
1.8%
8
IEEE Journal of Biomedical and Health Informatics
34 papers in training set
Top 0.9%
1.8%
9
Cancer Research
116 papers in training set
Top 2%
1.8%
10
Laboratory Investigation
13 papers in training set
Top 0.1%
1.8%
11
npj Precision Oncology
48 papers in training set
Top 0.5%
1.8%
12
eBioMedicine
130 papers in training set
Top 2%
1.4%
13
Skeletal Muscle
14 papers in training set
Top 0.1%
1.3%
14
Advanced Science
249 papers in training set
Top 13%
1.3%
15
PLOS ONE
4510 papers in training set
Top 59%
1.3%
16
Clinical Cancer Research
58 papers in training set
Top 1%
1.0%
17
Diagnostics
48 papers in training set
Top 2%
1.0%
18
Computers in Biology and Medicine
120 papers in training set
Top 4%
0.8%
19
Breast Cancer Research
32 papers in training set
Top 0.5%
0.8%
20
BMC Medical Informatics and Decision Making
39 papers in training set
Top 2%
0.8%
21
The Journal of Pathology
22 papers in training set
Top 0.4%
0.8%
22
Light: Science & Applications
16 papers in training set
Top 0.6%
0.8%
23
Neurocomputing
13 papers in training set
Top 0.5%
0.8%
24
Clinical Chemistry
22 papers in training set
Top 0.8%
0.8%
25
New Phytologist
309 papers in training set
Top 4%
0.8%
26
Frontiers in Bioinformatics
45 papers in training set
Top 0.8%
0.8%
27
Physics in Medicine & Biology
17 papers in training set
Top 0.4%
0.8%
28
iScience
1063 papers in training set
Top 30%
0.8%