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Harnessing Smartphone RGB Imagery and LiDAR Point Cloud for Enhanced Leaf Nitrogen and Shoot Biomass Assessment - Chinese Spinach as a Case Study

Harikumar, A.; Shenhar, I.; R.Pebes-Trujillo, M.; Qin, L.; Moshelion, M.; Jie, H.; Ng, K. W.; Gavish, M.; Herrmann, I.

2024-11-05 bioinformatics
10.1101/2024.10.26.620395 bioRxiv
Show abstract

Accurate estimation of leaf nitrogen concentration and shoot dry-weight biomass in leafy vegetables is crucial for crop yield management, stress assessment, and nutrient optimization in precision agriculture. However, obtaining this information often requires access to reliable plant physiological and biophysical data, which typically involves sophisticated equipment, such as high-resolution in-situ sensors and cameras. In contrast, smartphone-based sensing provides a cost-effective, manual alternative for gathering accurate plant data. In this study, we propose an innovative approach for estimating leaf nitrogen concentration and shoot biomass by integrating smartphone RGB imagery with Light Detection and Ranging (LiDAR) data, using Amaranthus dubius (Chinese spinach) as a case study. The influence of varying nitrogen dosages on individual spectral and structural features derived from smartphone RGB imagery and LiDAR data was modeled. Additionally, the spectral indices from RGB imagery and structural indices from LiDAR data were combined to model both leaf nitrogen concentration and shoot biomass. The performance of crop parameter modeling was evaluated using support vector regression, random forest regression, and lasso regression. Results demonstrate that the combined use of smartphone RGB imagery and LiDAR data can accurately estimate leaf total reduced nitrogen concentration, leaf nitrate concentration, and shoot dry-weight biomass, with average relative root mean square errors as low as 0.06, 0.16, and 0.05, respectively. Furthermore, the optimal nitrogen dosage for maximizing biomass yield in Chinese spinach was also estimated using the smartphone data. This study lays the groundwork for smartphone-based estimate leaf nitrogen concentration and shoot biomass, supporting accessible precision agriculture practices.

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