Back

Defense mechanisms in Lupinus luteus against Colletotrichum lupini, involving TIR-NBS-LRR protein, hypersensitive response and phenylpropanoid pathways

Godoy, G. A.; Levicoy, D.; Martinez-Hernandez, J. E.; Rupayan, A.; Hernandez, S.; Carrasco, M.; Caligari, P. D.; Baroncelli, R.; Garrido, H. S.

2024-10-18 plant biology
10.1101/2024.10.15.618496 bioRxiv
Show abstract

Lupins are key grain legumes for future crop production, providing highly sustainable protein, essential in the face of global warming, food security challenges, and the need for sustainable agriculture. Despite their potential, lupin crops are frequently devastated by Colletotrichum lupini, a member of the worlds top ten fungal pathogenic genera. In our previous study, we identified LluR1, the first C. lupini resistance gene, in a wild Lupinus luteus accession. Further research was necessary to unravel the defense mechanisms involved. Histological analysis revealed a hypersensitive response against C. lupini, while transcriptome analysis highlighted a complex network of differentially expressed genes, including TIR-NBS-LRR proteins, hypersensitive response, and phenylpropanoid pathways. SNPs were identified that distinguish the protein sequences underlying immunity. These findings, along with orthology in other lupin species, offer valuable insights for developing breeding strategies to enhance C. lupini resistance in lupins, with significant potential impacts on food, feed, and human nutrition.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Frontiers in Plant Science
○ 256 papers in training set
Top 0.2%
17.7%
Similar papers in this journal
2
Molecular Plant-Microbe Interactions®
● 57 papers in training set
Top 0.2%
6.0%
Similar papers in this journal
3
Journal of Experimental Botany
◐ 219 papers in training set
Top 1%
6.0%
Similar papers in this journal
4
Plant, Cell & Environment
○ 78 papers in training set
Top 0.5%
5.3%
Similar papers in this journal
5
New Phytologist
○ 346 papers in training set
Top 2%
5.3%
Similar papers in this journal
6
Plant Physiology and Biochemistry
○ 20 papers in training set
Top 0.1%
4.6%
7
Plant Science
○ 31 papers in training set
Top 0.2%
4.6%
8
Physiologia Plantarum
○ 39 papers in training set
Top 0.3%
4.1%
50% of probability mass above
9
BMC Plant Biology
○ 57 papers in training set
Top 0.2%
4.1%
10
The Plant Journal
○ 215 papers in training set
Top 2%
3.1%
11
Plant Direct
○ 95 papers in training set
Top 1%
3.1%
12
Molecular Plant Pathology
○ 25 papers in training set
Top 0.2%
3.1%
13
Plant Physiology
◐ 238 papers in training set
Top 2%
2.5%
14
Planta
○ 18 papers in training set
Top 0.2%
2.5%
15
Phytopathology®
● 31 papers in training set
Top 0.2%
2.5%
16
Plants
○ 43 papers in training set
Top 0.7%
2.0%
17
Plant Molecular Biology
○ 20 papers in training set
Top 0.3%
2.0%
18
Plant Biology
○ 15 papers in training set
Top 0.2%
1.6%
19
Plant Cell Reports
○ 17 papers in training set
Top 0.3%
1.6%
20
Plant Pathology
○ 18 papers in training set
Top 0.2%
1.6%
21
Frontiers in Genetics
○ 230 papers in training set
Top 4%
1.1%
22
Plant Stress
○ 12 papers in training set
Top 0.7%
0.8%
23
Gene Reports
○ 14 papers in training set
Top 0.7%
0.8%
24
Microorganisms
○ 106 papers in training set
Top 4%
0.8%
25
Scientific Reports
○ 3612 papers in training set
Top 79%
0.6%
26
Biology
○ 45 papers in training set
Top 1%
0.6%
27
PLOS ONE
● 5266 papers in training set
Top 64%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.