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Detection of protein-protein interactions by bio-orthogonal fluorogenic proximity probes

Torell, A.; Larsson, N. A.; Phillipson, S. K.; Odell, L. R.; Furth, D.

2024-08-20 molecular biology
10.1101/2024.08.20.608485 bioRxiv
Show abstract

Detecting protein-protein interactions within cells is challenging. Transgenic approaches risk altering protein function via fluorescent tagging, while in situ methods lack in vivo compatibility. Here, we introduce fluorogenic probes with dual-tetrazine pegylated branched arms linked to xanthene dye. Activation requires both tetrazine arms to interact simultaneously with target proteins, enabling dual-substrate recognition. We applied our method to detect protein-protein interactions in both fixed and living cells, utilizing antibody conjugation for fixed cells and genetic code expansion for real-time detection in living cells. Our strategy ensures versatile applicability and seamless transition between fixed and living systems.

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