Back

Obtaining super-resolved images at the mesoscale through Super-Resolution Radial Fluctuations

Brown, M.; Foylan, S.; Rooney, L. M.; Gould, G. W.; McConnell, G.

2024-08-01 biophysics
10.1101/2024.07.31.606008 bioRxiv
Show abstract

Super-resolution microscopy overcomes the diffraction limit of light to achieve higher spatial resolutions than are typically available when using light microscopy techniques. However, these methods are usually restricted to imaging a very small field of view (FOV). Here, we have applied one of these super-resolution techniques, Super-Resolution Radial Fluctuations (SRRF) in conjunction with the Mesolens, which has the unusual combination of a low-magnification and high numerical aperture, to obtain super-resolved images over a FOV of 4.4 mm x 3.0 mm. We assessed the accuracy of these SRRF images through error maps calculated using a secondary analysis method, Super-resolution Quantitative Image Rating and Reporting of Error Locations (SQUIRREL). We demonstrate it is possible to achieve images with a resolution of 446.3 {+/-} 10.9 nm, providing a [~]1.6-fold improvement in spatial resolution over a uniquely large field, with consistent structural agreement between raw data and SRRF processed images. MotivationCurrent super-resolution imaging techniques allow for a greater understanding of cellular structures however they are often complex or only have the ability to image a few cells at once. This small field of view may not represent the behaviour across the entire sample and the manual selection of which restricted ROI to use may introduce bias. Currently, this is often circumvented by stitching and tiling methods which stitch many small ROI together, however this can result in artefacts across an image which poses an issue when analysing data. To combat this, we have used the Mesolens alongside Super-Resolution Radial Fluctuations analysis, to obtain super-resolved images over a field of view of 4.4 mm x 3.0 mm with minimal error.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Journal of Microscopy
18 papers in training set
Top 0.1%
18.5%
2
Biomedical Optics Express
84 papers in training set
Top 0.1%
14.3%
3
PLOS ONE
4510 papers in training set
Top 25%
6.8%
4
Scientific Reports
3102 papers in training set
Top 24%
4.8%
5
Wellcome Open Research
57 papers in training set
Top 0.2%
4.8%
6
Optica
25 papers in training set
Top 0.3%
3.8%
50% of probability mass above
7
Optics Express
23 papers in training set
Top 0.1%
3.6%
8
Journal of Biophotonics
16 papers in training set
Top 0.1%
3.6%
9
Journal of Structural Biology
58 papers in training set
Top 0.6%
1.9%
10
Microscopy and Microanalysis
12 papers in training set
Top 0.1%
1.8%
11
IUCrJ
29 papers in training set
Top 0.2%
1.7%
12
Optics Letters
13 papers in training set
Top 0.2%
1.3%
13
Nature Communications
4913 papers in training set
Top 55%
1.3%
14
Journal of Biomedical Optics
25 papers in training set
Top 0.4%
1.3%
15
ACS Photonics
13 papers in training set
Top 0.3%
1.2%
16
Journal of Cell Science
353 papers in training set
Top 2%
1.2%
17
Biophysical Journal
545 papers in training set
Top 4%
1.2%
18
Development
440 papers in training set
Top 3%
1.1%
19
Bioinformatics
1061 papers in training set
Top 8%
1.1%
20
BMC Methods
11 papers in training set
Top 0.1%
0.9%
21
iScience
1063 papers in training set
Top 27%
0.9%
22
Biological Imaging
15 papers in training set
Top 0.2%
0.9%
23
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences
12 papers in training set
Top 0.1%
0.8%
24
Journal of Neuroscience Methods
106 papers in training set
Top 2%
0.7%
25
Journal of Applied Crystallography
14 papers in training set
Top 0.1%
0.7%
26
Methods
29 papers in training set
Top 0.7%
0.7%
27
Biophysical Reports
36 papers in training set
Top 0.5%
0.7%
28
Molecular Biology of the Cell
272 papers in training set
Top 3%
0.7%
29
Acta Crystallographica Section D Structural Biology
54 papers in training set
Top 0.4%
0.7%
30
Physical Biology
43 papers in training set
Top 2%
0.7%