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GW: ultra-fast chromosome-scale visualisation of genomics data

Baird, D. M.; Kearsey, A.; Cleal, K.

2024-07-26 bioinformatics
10.1101/2024.07.26.605272 bioRxiv
Show abstract

Genome-Wide (GW) is an interactive genome browser that expedites analysis of aligned sequencing reads and data tracks, and introduces novel interfaces for exploring, annotating and quantifying data. GWs high-performance design enables rapid rendering of data at speeds approaching the file reading rate, in addition to removing the memory constraints of visualizing large regions. We report substantial gains in performance and demonstrate GWs utility in exploring massive genomic regions or chromosomes without requiring additional processing.

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The top 4 journals account for 50% of the predicted probability mass.

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"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.