Back

Quantifying Contributions from TopologicalCycles in the Brain Network towards Cognition

Garai, S.; Vo, S.; Blank, L.; Xu, F.; Chen, J.; Duong-Tran, D.; Zhao, Y.; Shen, L.

2024-06-04 bioinformatics
10.1101/2024.06.03.597217 bioRxiv
Show abstract

This study proposes a novel metric called Homological Vertex Importance Profile (H-VIP), utilizing topological data analysis tool persistent homology, to analyze human brain structural and functional connectomes. Persistent homology is a useful tool for identifying topological features such as cycles and cavities within a network. The salience of persistent homology lies in the fact that it offers a global view of the network as a whole. However, it falls short in precisely determining the relative relevance of the vertices of the network that contribute to these topological features. Our aim is to quantify the contribution of each individual vertex in the formation of homological cycles and provide insight into local connectivity. Our proposed H-VIP metric captures, quantifies, and compresses connectivity information from vertices even at multiple degrees of separation and projects back onto each vertex. Using this metric, we analyze two independent datasets: structural connectomes from the Human Connectome Project and functional connectomes from the Alzheimers Disease Neuroimaging Initiative. Our findings indicate a positive correlation between various cognitive measures and H-VIP, in both anatomical and functional brain networks. Our study also demonstrates that the connectivity in the frontal lobe has a higher correlation with cognitive performance compared to the whole brain network. Furthermore, the H-VIP provides us with a metric to easily locate, quantify, and visualize potentially impaired connectivity for each subject and may have applications in the context of personalized medicine for neurological diseases and disorders.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Neuroinformatics
40 papers in training set
Top 0.1%
10.7%
2
IEEE Journal of Biomedical and Health Informatics
34 papers in training set
Top 0.1%
10.7%
3
Scientific Reports
3102 papers in training set
Top 9%
8.6%
4
Network Neuroscience
116 papers in training set
Top 0.1%
8.4%
5
Brain Connectivity
22 papers in training set
Top 0.1%
8.4%
6
BMC Bioinformatics
383 papers in training set
Top 2%
5.0%
50% of probability mass above
7
PLOS ONE
4510 papers in training set
Top 33%
4.4%
8
Frontiers in Neuroscience
223 papers in training set
Top 2%
2.8%
9
Human Brain Mapping
295 papers in training set
Top 2%
2.1%
10
IEEE Access
31 papers in training set
Top 0.2%
2.1%
11
Bioinformatics
1061 papers in training set
Top 7%
1.9%
12
PLOS Computational Biology
1633 papers in training set
Top 15%
1.8%
13
Chaos, Solitons & Fractals
32 papers in training set
Top 1.0%
1.7%
14
Frontiers in Genetics
197 papers in training set
Top 5%
1.7%
15
Computers in Biology and Medicine
120 papers in training set
Top 2%
1.7%
16
Frontiers in Human Neuroscience
67 papers in training set
Top 1%
1.7%
17
Computational and Structural Biotechnology Journal
216 papers in training set
Top 5%
1.4%
18
NeuroImage
813 papers in training set
Top 4%
1.4%
19
Briefings in Bioinformatics
326 papers in training set
Top 5%
1.4%
20
Biology Methods and Protocols
53 papers in training set
Top 2%
1.1%
21
Neurocomputing
13 papers in training set
Top 0.4%
1.1%
22
Bioengineering
24 papers in training set
Top 1.0%
0.9%
23
Bioinformatics Advances
184 papers in training set
Top 4%
0.8%
24
Communications Biology
886 papers in training set
Top 25%
0.7%
25
Biomolecules
95 papers in training set
Top 3%
0.7%
26
SoftwareX
15 papers in training set
Top 0.5%
0.7%
27
Applied Sciences
24 papers in training set
Top 1%
0.5%
28
Frontiers in Computational Neuroscience
53 papers in training set
Top 3%
0.5%
29
PeerJ
261 papers in training set
Top 19%
0.5%
30
Biomedical Signal Processing and Control
18 papers in training set
Top 0.6%
0.5%