Back

Hyperoxia Induced Chromatin Remodeling in Mesenchymal Stromal Cells

Monroe, L.; Kaonis, S.; Kabi, N.; Ghosh, S.

2023-12-29 biophysics
10.1101/2023.12.29.573604 bioRxiv
Show abstract

Chromatin is a highly dynamic entity of the eukaryotic cell nucleus. New evidence is emerging in support of the notion that chromatin can locally and globally rearrange itself to adapt with the cellular microenvironmental changes. Such changes include oxidative stress such as supraphysiological oxygen level, found in hyperoxia. Although it is known that hyperoxia can result in DNA damage and alterations in cell function, it is not well understood how the chromatin architecture changes under such a condition and what the functional significance of such change entails. In this work we developed an imaging-based technique to visualize and characterize nanoscale chromatin remodeling under hyperoxia, created via hydrogen peroxide treatment. We found high spatiotemporal variability of remodeling in different chromatin domains such as the euchromatin, heterochromatin and interchromatin. Chromatin remodeling was hindered by the GSK126 mediated inhibition of methyltransferase EZH2, which regulates the chromatin compaction. Epigenetic modifications and DNA damage under hyperoxia was investigated, which was found affected by the pretreatment of GSK126. The developed techniques and findings inform us with new mechanistic insights of chromatin remodeling which might lead to new intervention strategies to target genotoxic hyper-oxidative stress, which is common in degenerative diseases and aging, and for cell therapy in regenerative medicine.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
PLOS ONE
5266 papers in training set
Top 16%
11.8%
2
Biochemistry and Biophysics Reports
30 papers in training set
Top 0.1%
9.7%
3
Advanced Biology
29 papers in training set
Top 0.1%
8.8%
4
Scientific Reports
3612 papers in training set
Top 13%
6.2%
5
International Journal of Molecular Sciences
494 papers in training set
Top 1%
5.4%
6
Methods
34 papers in training set
Top 0.1%
4.0%
7
Biomolecules
100 papers in training set
Top 0.4%
3.2%
8
Biochimica et Biophysica Acta (BBA) - General Subjects
18 papers in training set
Top 0.1%
3.2%
50% of probability mass above
9
Epigenetics & Chromatin
42 papers in training set
Top 0.2%
2.6%
10
The FASEB Journal
194 papers in training set
Top 2%
2.4%
11
Experimental Cell Research
28 papers in training set
Top 0.2%
2.4%
12
Cells
249 papers in training set
Top 2%
2.1%
13
Frontiers in Cell and Developmental Biology
233 papers in training set
Top 2%
1.7%
14
Life
29 papers in training set
Top 0.3%
1.7%
15
ChemBioChem
55 papers in training set
Top 0.7%
1.4%
16
Biophysical Journal
631 papers in training set
Top 4%
1.1%
17
Open Biology
106 papers in training set
Top 1%
1.1%
18
iScience
1154 papers in training set
Top 29%
1.1%
19
Biochemical and Biophysical Research Communications
84 papers in training set
Top 2%
1.1%
20
The FEBS Journal
93 papers in training set
Top 1%
1.1%
21
Journal of Cellular Physiology
25 papers in training set
Top 0.5%
1.0%
22
Small
78 papers in training set
Top 1%
1.0%
23
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
1.0%
24
Cell Proliferation
12 papers in training set
Top 0.2%
1.0%
25
Epigenetics
50 papers in training set
Top 0.5%
1.0%
26
Free Radical Biology and Medicine
36 papers in training set
Top 0.6%
1.0%
27
Journal of Cell Science
393 papers in training set
Top 4%
0.9%
28
Antioxidants
25 papers in training set
Top 0.5%
0.9%
29
Biomedicines
67 papers in training set
Top 3%
0.8%
30
Journal of Biophotonics
16 papers in training set
Top 0.3%
0.8%