A polygenic risk score identifies undiagnosed cases of diabetes
German, C.; Ashenhurst, J.; Wang, W.; 23andMe Research Team, ; Granka, J. M.; Koelsch, B. L.; Abul-Husn, N. S.; Aslibekyan, S.; Auton, A.; Tung, J.; Shringarpure, S. S.; Holmes, M. V.
Show abstract
ImportanceTwenty-three percent of 37.3M adults in the USA with diabetes are estimated to be undiagnosed, leading to potentially avoidable sequelae and morbidity. ObjectiveTo explore the utility of a polygenic risk score (PRS) at identifying individuals with undiagnosed diabetes and prediabetes. Design, Setting and ParticipantsIndividuals without doctor-diagnosed diabetes at study baseline in the UK Biobank (UKB) with HbA1c and BMI measurements. Participants were restricted to white individuals to use an ancestry-appropriate PRS. Undiagnosed diabetes and prediabetes were defined using HbA1c ([≥]6.5% and [≥]5.7 - <6.5%, respectively). ExposuresA diabetes PRS comprising 13,863 SNPs derived from the 23andMe Research Cohort, and measured BMI among UKB participants. ResultsOf 412,439 individuals self-reporting an absence of diagnosed diabetes and who had BMI and HbA1c measurements at baseline, 2,934 (0.7%) had undiagnosed diabetes, representing 11.9% of all (diagnosed and undiagnosed) diabetes. Nearly half (1,362, 46%) of undiagnosed diabetes cases were among individuals in the top 25% of the PRS distribution. Overweight individuals (BMI [≥]25 - <30 kg/m2) who were in the top 12.5% of the PRS distribution had a similar frequency of undiagnosed diabetes (0.8-1.6% frequency) as individuals with obesity (BMI [≥]30kg/m2) in the lowest 12.5% of the PRS distribution (0.7-1.7% frequency). Combining overweight and obesity with the PRS identified nearly all cases of undiagnosed diabetes: individuals with a BMI [≥]25 kg/m2 (66% of the study population) or those in the top 54-69% of the PRS identified 98-99% of undiagnosed cases. Of the 199 undiagnosed diabetes cases occurring among individuals with a normal BMI (<25kg/m2), two-thirds were among individuals in the top 50% of the PRS. Prediabetes was common (14%), with measured BMI and PRS providing additive risk. Among those in the top 12.5% PRS with BMI [≥]35kg/m2, 6.3% developed incident diabetes over 4 years follow-up, as compared to 0% among the bottom 12.5% PRS with BMI<25kg/m2. ConclusionsA diabetes PRS is informative at identifying undiagnosed cases. PRS may have broader utility in detecting individuals with asymptomatic disease. Key PointsO_ST_ABSQuestionC_ST_ABSDoes a polygenic risk score (PRS) have utility in identifying individuals with undiagnosed type 2 diabetes (T2D)? FindingsIn this analysis of 412,439 individuals without doctor-diagnosed diabetes, a T2D PRS performed additively to body mass index (BMI) at identifying individuals with undiagnosed diabetes. Selecting individuals on the basis of overweight/obesity or a T2D PRS identified almost all cases of undiagnosed diabetes. The majority of undiagnosed diabetes cases among individuals with normal weight occurred among those at elevated polygenic risk. MeaningA T2D PRS identifies cases of undiagnosed diabetes among individuals with and without overweight or obesity.
Matching journals
The top 2 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Early metabolic features of genetic liability to type 2 diabetes: cohort study with repeated metabolomics across early life 95%
- Poor in-utero growth, reduced beta cell secretion and high plasma glucose in childhood are harbingers of glucose intolerance in young Indians 95%
- Accounting for age-related increases in HbA1c more accurately quantifies risk of Type 1 Diabetes progression in islet autoantibody-positive adults 94%
Similar papers in this journal
- The power of TOPMed imputation for the discovery of Latino enriched rare variants associated with type 2 diabetes 95%
- Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: an overview of the data from the epidemiological studies within the IMI DIRECT Consortium 94%
- Epigenome-wide association study of incident type 2 diabetes in Black and White participants from the Atherosclerosis Risk in Communities Study 93%
Similar papers in this journal
- Integrative proteogenomic analyses provide novel interpretations of type 1 diabetes risk loci through circulating proteins 94%
- Impacts of COVID-19 on glycemia and risk of diabetic ketoacidosis 94%
- Characterizing common and rare variations in non-traditional glycemic biomarkers using multivariate approaches on multi-ancestry ARIC study 93%
Similar papers in this journal
- Systematic review of precision subclassification of type 2 diabetes 95%
- Using Genomic Context Informed Genotype Data and Within-model Ancestry Adjustment to Classify Type 2 Diabetes 93%
- Estimating Heritability of Glycaemic Response to Metformin using Nationwide Electronic Health Records and Population-Sized Pedigree 90%
Similar papers in this journal
- Metabolic and proteomic signatures of type 2 diabetes subtypes in an Arab population 95%
- Disentangling the direct and indirect effects of childhood adiposity on type 1 diabetes and immune-associated diseases: a multivariable Mendelian randomization study 93%
- The genetic underpinnings of variable penetrance and expressivity of pathogenic mutations in cardiometabolic traits 92%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.