Back

Deep metric learning for few-shot X-ray image classification

Prokop, J.; Montalt Tordera, J.; Mohammadi, S.; Jaworek-Korjakowska, J.

2023-08-28 radiology and imaging
10.1101/2023.08.27.23294690 medRxiv
Show abstract

Deep learning models have proven the potential to aid professionals with medical image analysis, including many image classification tasks. However, the scarcity of data in medical imaging poses a significant challenge, as the limited availability of diverse and comprehensive datasets hinders the development and evaluation of accurate and robust imaging algorithms and models. Few-shot learning approaches have emerged as a potential solution to address this issue. In this research, we propose to deploy the Generalized Metric Learning Model for Few-Shot X-ray Image Classification. The model comprises a feature extractor to embed images into a lower-dimensional space and a distance-based classifier for label assignment based on the relative distance of these embeddings. We extensively evaluate the model using various pre-trained convolutional neural networks (CNNs) and vision transformers (ViTs) as feature extractors. We also assess the performance of the commonly used distance-based classifiers in several few-shot settings. Finally, we analyze the potential to adapt the feature encoders to the medical domain with both supervised and self-supervised frameworks. Our model achieves 0.689 AUROC in 2-way 5-shot COVID-19 recognition task when combined with REMEDIS (Robust and Efficient Medical Imaging with Self-supervision) domain-adapted model as feature extractor, and 0.802 AUROC in 2-way 5-shot tuberculosis recognition task with domain-adapted DenseNet-121 model. Moreover, the simplicity and flexibility of our approach allows for easy improvement in the feature, either by incorporating other few-shot methods or new, powerful architectures into the pipeline.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
IEEE Access
35 papers in training set
Top 0.1%
12.3%
2
Scientific Reports
3612 papers in training set
Top 6%
8.8%
3
Expert Systems with Applications
11 papers in training set
Top 0.1%
7.8%
4
PLOS ONE
5266 papers in training set
Top 22%
7.8%
5
Nature Machine Intelligence
70 papers in training set
Top 0.6%
4.3%
6
Frontiers in Computational Neuroscience
60 papers in training set
Top 0.3%
4.3%
7
PLOS Digital Health
106 papers in training set
Top 1%
4.0%
8
Journal of Medical Imaging
11 papers in training set
Top 0.1%
3.5%
50% of probability mass above
9
Computers in Biology and Medicine
128 papers in training set
Top 1%
3.4%
10
Medical Image Analysis
35 papers in training set
Top 0.3%
3.2%
11
Nature Communications
5641 papers in training set
Top 36%
3.2%
12
GigaScience
212 papers in training set
Top 1%
3.1%
13
IEEE/ACM Transactions on Computational Biology and Bioinformatics
38 papers in training set
Top 0.4%
2.4%
14
Biomedical Signal Processing and Control
22 papers in training set
Top 0.3%
2.1%
15
JMIRx Med
32 papers in training set
Top 0.7%
2.1%
16
Medical Physics
14 papers in training set
Top 0.3%
1.9%
17
Patterns
78 papers in training set
Top 1%
1.9%
18
Informatics in Medicine Unlocked
22 papers in training set
Top 0.6%
1.7%
19
IEEE Transactions on Medical Imaging
21 papers in training set
Top 0.3%
1.3%
20
Sensors
43 papers in training set
Top 1.0%
1.1%
21
Diagnostics
50 papers in training set
Top 2%
1.0%
22
Bioinformatics
1204 papers in training set
Top 9%
0.8%
23
European Radiology
15 papers in training set
Top 0.6%
0.8%
24
PLOS Computational Biology
1863 papers in training set
Top 20%
0.8%
25
Frontiers in Plant Science
256 papers in training set
Top 4%
0.8%
26
npj Digital Medicine
118 papers in training set
Top 3%
0.8%
27
Mathematics
11 papers in training set
Top 0.3%
0.8%
28
Frontiers in Artificial Intelligence
20 papers in training set
Top 0.8%
0.8%
29
Frontiers in Neuroinformatics
41 papers in training set
Top 0.8%
0.6%
30
iScience
1154 papers in training set
Top 41%
0.6%