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Time-Series Classification For Patients Under Active Surveillance And Screening Using Echo State Network

Li, Z.; Zaikin, A.; Blyuss, O.

2023-04-28 bioinformatics
10.1101/2023.04.24.538057 bioRxiv
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AO_SCPLOWBSTRACTC_SCPLOWOver the past few decades, more and more patients come on follow-up studies such as active surveillance and screening, which results in a vast amount of time-series data in the health department. Each Patient typically has a small but different number of visits to the doctor and the time interval between the visits is heterogeneous. Nowadays, many machine learning tasks in relation to time series data are carried out using deep recurrent neural networks (RNN). However, deep neural networks consume enormous computational power as all weights in the network need to be trained through back-propagation. Conversely, echo state network (ESN), another form of RNN, demonstrates low training cost and the potential of it is still largely untapped. Therefore, in this article we will develop a new methodology that can classify aforementioned time-series data using the echo state network. We will also discuss how to address the heterogeneity in the time interval arising from the data of this type and how our model can also potentially fit other time-series data.

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