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Emergence and rapid dissemination of highly pathogenic avian influenza virus H5N1 clade 2.3.4.4b in wild birds, Chile.

Ariyama, N.; Pardo Roa, C.; Munoz, G.; Aguayo, C.; Avila, C.; Mathieu, C.; Brito, B.; Medina, R.; Johow, M.; Neira-Ramirez, V.

2023-04-07 microbiology
10.1101/2023.04.07.535949 bioRxiv
Show abstract

In December 2022, HPAI H5N1 clade 2.3.4.4b emerged in Chile. We detected the virus in 93 wild bird samples and sequenced the whole genome of nine Chilean strains from pelicans and gulls. Phylogenetic analysis suggests at least two different HPAI viral clusters in South America.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Emerging Infectious Diseases
● 105 papers in training set
Top 0.1%
19.2%
Similar papers in this journal
2
Emerging Microbes & Infections
○ 74 papers in training set
Top 0.1%
15.6%
Similar papers in this journal
3
Microbiology Spectrum
● 469 papers in training set
Top 1%
9.2%
Similar papers in this journal
4
PLOS ONE
● 5266 papers in training set
Top 28%
5.3%
Similar papers in this journal
5
Viruses
○ 332 papers in training set
Top 1%
3.6%
Similar papers in this journal
50% of probability mass above
6
Transboundary and Emerging Diseases
○ 37 papers in training set
Top 0.1%
3.3%
7
Journal of Clinical Virology
○ 63 papers in training set
Top 0.2%
2.7%
8
Influenza and Other Respiratory Viruses
○ 46 papers in training set
Top 0.2%
2.5%
9
Journal of Clinical Microbiology
● 130 papers in training set
Top 0.6%
2.5%
10
PLOS Neglected Tropical Diseases
● 466 papers in training set
Top 3%
2.5%
11
Journal of Travel Medicine
◐ 18 papers in training set
Top 0.1%
2.2%
12
mSphere
● 302 papers in training set
Top 3%
2.2%
13
Infection, Genetics and Evolution
○ 42 papers in training set
Top 0.4%
1.8%
14
Journal of Medical Virology
○ 140 papers in training set
Top 1%
1.7%
15
Virus Evolution
◐ 155 papers in training set
Top 0.9%
1.6%
16
Microorganisms
○ 106 papers in training set
Top 2%
1.4%
17
Scientific Reports
○ 3612 papers in training set
Top 59%
1.4%
18
Microbiology Resource Announcements
● 25 papers in training set
Top 0.3%
1.2%
19
Frontiers in Microbiology
○ 427 papers in training set
Top 7%
1.1%
20
Frontiers in Veterinary Science
○ 32 papers in training set
Top 0.5%
1.1%
21
Journal of General Virology
● 53 papers in training set
Top 0.7%
1.0%
22
Journal of Virology
● 499 papers in training set
Top 3%
0.6%
23
Vaccine
○ 203 papers in training set
Top 2%
0.6%
24
Archives of Virology
○ 15 papers in training set
Top 0.3%
0.6%
25
BMC Infectious Diseases
○ 133 papers in training set
Top 4%
0.6%
26
Access Microbiology
● 25 papers in training set
Top 1%
0.5%
27
The Lancet Infectious Diseases
○ 73 papers in training set
Top 1%
0.5%
28
Eurosurveillance
● 83 papers in training set
Top 1%
0.5%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.