BQsupports: systematic assessment of the support and novelty of new biomedical associations
Fernandez, A.; Locatelli, M.; Bertoni, M.; Aloy, P.
Show abstract
Living a Big Data era in Biomedicine, there is an unmet need to systematically assess experimental observations in the context of available information. This assessment would offer a means for an unbiased validation of the results and provide an initial estimate of the potential novelty of the findings. Here we present BQsupports, a web-based tool built upon the Bioteque biomedical descriptors that systematically analyzes and quantifies the current support to a given set of observations. The tool relies on over 1,000 distinct types of biomedical descriptors, covering over 11 different biological and chemical entities, including genes, cell lines, diseases and small molecules. By exploring hundreds of descriptors, BQsupports provide support scores for each observation across a wide variety of biomedical contexts. These scores are then aggregated to summarize the biomedical support of the assessed dataset as a whole. Finally, the BQsupports also suggests predictive features of the given dataset, which can be exploited in downstream machine learning applications. Availability and implementationThe web application and underlying data are available online (https://bqsuppports.irbbarcelona.org). Contactpatrick.aloy@irbbarcelona.org
Matching journals
The top 1 journal accounts for 50% of the predicted probability mass.
Similar papers in this journal
- AutoPM3: Enhancing Variant Interpretation via LLM-driven PM3 Evidence Extraction from Scientific Literature 95%
- BioMedGraphica: An All-in-One Platform for Biomedical Prior Knowledge and Omic Signaling Graph Generation 93%
- CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision 93%
Similar papers in this journal
- CENTRA: Knowledge-Based Gene Contexuality Graphs Reveal Functional Master Regulators by Centrality and Fractality 92%
- Predicting Gene Disease Associations With Knowledge Graph Embeddings For Diseases With Curtailed Information 92%
- Eduomics: a Nextflow pipeline to simulate -omics data for education 91%
Similar papers in this journal
- CROssBAR: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations 95%
- FunCoup 6: advancing functional association networks across species with directed links and improved user experience 93%
- DeepSpaceDB: a spatial transcriptomics atlas for interactive in-depth analysis of tissues and tissue microenvironments 92%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.