GUIFold - A graphical user interface for local AlphaFold2
Kempf, G.; Cavadini, S.
Show abstract
GUIFold is a graphical user interface for the open-source structure prediction pipeline AlphaFold2. A particular emphasis lies on tracking prediction jobs in a database as well as user-friendly submission to queueing systems. GUIFold is built on top of a modified AlphaFold2 pipeline that primarily allows more control of the feature generation step. Additionally, the application provides an evaluation pipeline to rank predictions and visualize confidence metrics. GUIFold can be installed along with AlphaFold2 in a virtual environment and, after initial setup, allows running jobs without particular technical expertise.
Matching journals
The top 1 journal accounts for 50% of the predicted probability mass.
Similar papers in this journal
Similar papers in this journal
Similar papers in this journal
- dms-viz: Structure-informed visualizations for deep mutational scanning and other mutation-based datasets 92%
- diverse-seq: an application for alignment-free selecting and clustering biological sequences 92%
- alignparse: A Python package for parsing complex features from high-throughput long-read sequencing 90%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.