OpenChart-SE: A corpus of artificial Swedish electronic health records for imagined emergency care patients written by physicians in a crowd-sourcing project
Berg, J.; Aasa, C. O.; Appelgren Thorell, B.; Aits, S.
Show abstract
Electronic health records (EHRs) are a rich source of information for medical research and public health monitoring. Information systems based on EHR data could also assist in patient care and hospital management. However, much of the data in EHRs is in the form of unstructured text, which is difficult to process for analysis. Natural language processing (NLP), a form of artificial intelligence, has the potential to enable automatic extraction of information from EHRs and several NLP tools adapted to the style of clinical writing have been developed for English and other major languages. In contrast, the development of NLP tools for less widely spoken languages such as Swedish has lagged behind. A major bottleneck in the development of NLP tools is the restricted access to EHRs due to legitimate patient privacy concerns. To overcome this issue we have generated a citizen science platform for collecting artificial Swedish EHRs with the help of Swedish physicians and medical students. These artificial EHRs describe imagined but plausible emergency care patients in a style that closely resembles EHRs used in emergency departments in Sweden. In the pilot phase, we collected a first batch of 50 artificial EHRs, which has passed review by an experienced Swedish emergency care physician. We make this dataset publicly available as OpenChart-SE corpus (version 1) under an open-source license for the NLP research community. The project is now open for general participation and Swedish physicians and medical students are invited to submit EHRs on the project website (https://github.com/Aitslab/openchart-se). Additional batches of quality-controlled EHRs will be released periodically.
Matching journals
The top 8 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Natural Language Word-Embeddings as a glimpse into healthcare at the End Of Life 91%
- Connecting Artificial Intelligence and Primary Care Challenges: Findings from a Multi-Stakeholder Collaborative Consultation 91%
- Development of a customised data management system for a COVID-19-adapted colorectal cancer pathway 91%
Similar papers in this journal
- Evaluating the impact on clinical task efficiency of a natural language processing algorithm for searching medical documents: Prospective crossover study 94%
- FHIR-DHP: A Standardized Clinical Data Harmonisation Pipeline for scalable AI application deployment 93%
- Is the quality of hospital EHR data sufficient to evidence its ICHOM outcomes performance in heart failure? A pilot evaluation 93%
Similar papers in this journal
Similar papers in this journal
- Detecting Goals of Care Conversations in Clinical Notes with Active Learning 93%
- De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data 93%
- EHR-QC: A streamlined pipeline for automated electronic health records standardisation and preprocessing to predict clinical outcomes 93%
Similar papers in this journal
- Structured Codes and Free-Text Notes: Measuring Information Complementarity in Electronic Health Records 95%
- Design and implementation of a system for automated monitoring of adherence to evidenced-based clinical guideline recommendations 94%
- COHD-COVID: Columbia Open Health Data for COVID-19 Research 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.