Back

A Transducing Bacteriophage Infecting Staphylococcus epidermidis Contributes to the Expansion of aNovel Siphovirus Genus and Implies Genus is Inappropriate for Phage Therapy

Andrews, T.; Hoyer, J. S.; Ficken, K.; Fey, P. D.; Duffy, S.; Boyd, J.

2022-10-14 microbiology
10.1101/2022.10.13.512176 bioRxiv
Show abstract

The effort to discover novel phages infecting Staphylococcus epidermidis contributes to both the development of phage therapy and the expansion of genome-based phage phylogeny. Here, we report the genome of an S. epidermidis-infecting phage SEP1 and compare its genome with five other sequenced phages with high sequence identity. These phages represent a novel siphovirus genus, which was recently reported in the literature. The published member of this group was favorably evaluated as a phage therapeutic agent, but SEP1 is capable of transducing antibiotic resistance. Members of this genus may be maintained within their host as extrachromosomal plasmid prophages, through stable lysogeny or pseudolysogeny. Therefore, we conclude that SEP1 may be temperate and members of this novel genus are not suitable for phage therapy.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
PLOS ONE
5266 papers in training set
Top 13%
15.1%
2
Viruses
332 papers in training set
Top 0.3%
9.8%
3
Microbiology
65 papers in training set
Top 0.1%
9.7%
4
Access Microbiology
25 papers in training set
Top 0.1%
7.9%
5
Microbial Genomics
225 papers in training set
Top 1.0%
3.2%
6
Current Microbiology
18 papers in training set
Top 0.1%
3.2%
7
Virology
61 papers in training set
Top 0.4%
3.2%
50% of probability mass above
8
Microbiology Spectrum
469 papers in training set
Top 5%
2.4%
9
Microorganisms
106 papers in training set
Top 0.9%
2.4%
10
Journal of General Virology
53 papers in training set
Top 0.4%
2.1%
11
Scientific Reports
3612 papers in training set
Top 47%
2.1%
12
mSystems
394 papers in training set
Top 4%
1.7%
13
Archives of Virology
15 papers in training set
Top 0.2%
1.7%
14
Antibiotics
34 papers in training set
Top 0.5%
1.7%
15
BMC Research Notes
33 papers in training set
Top 0.4%
1.7%
16
Journal of Applied Microbiology
20 papers in training set
Top 0.4%
1.5%
17
Applied and Environmental Microbiology
339 papers in training set
Top 4%
1.4%
18
Frontiers in Microbiology
427 papers in training set
Top 6%
1.4%
19
BMC Genomics
406 papers in training set
Top 5%
1.4%
20
mSphere
302 papers in training set
Top 5%
1.1%
21
Pathogens
56 papers in training set
Top 1.0%
1.1%
22
Virology Journal
32 papers in training set
Top 0.6%
1.1%
23
PLOS Neglected Tropical Diseases
466 papers in training set
Top 5%
1.0%
24
PeerJ
308 papers in training set
Top 9%
1.0%
25
Genes
144 papers in training set
Top 3%
1.0%
26
Microbiology Resource Announcements
25 papers in training set
Top 0.5%
0.8%
27
Journal of Bacteriology
212 papers in training set
Top 2%
0.8%
28
Microbiological Research
22 papers in training set
Top 0.7%
0.8%
29
Journal of Hospital Infection
29 papers in training set
Top 0.5%
0.8%
30
Genomics
64 papers in training set
Top 2%
0.6%