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Using the ANDROMEDA by Prosilico Software for Prediction of the Human Pharmacokinetics of 4 Compounds of Natural Origin - Colistin, Curucumin, UCN-01 and Voclosporin

Fagerholm, U.; Hellberg, S.; Alvarsson, J.; Spjuth, O.

2022-08-17 pharmacology and toxicology
10.1101/2022.08.17.504228 bioRxiv
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AO_SCPLOWBSTRACTC_SCPLOWO_ST_ABSBackgroundC_ST_ABSIt is important that pharmacokinetic (PK) prediction methods are validated, and also for compounds with varying physicochemical properties, molecular weights and PK characteristics. MethodsThe objective was to investigate how well the ANDROMEDA by Prosilico software predicts the clinical PK of four compounds of natural origin and with PK obstacles, not yet fully characterized PK, and/or inaccurate lab method-based predictions - colistin (negligible absorption, good metabolic stability, significant excretion), curucumin (low solubility, apparently poor bioavailability), UCN-01 (extremely high degree of plasma protein binding, metabolic stability, long half-life and poor PK prediction) and voclosporin (poorly understood PK). ResultsAll categorial predictions except one were correct, and the median prediction error was 2.5-fold. Largest prediction errors were found for the unbound fraction in plasma (>24-fold), clearance (178-fold) and half-life (90-fold) of UCN-01. Corresponding errors for clearance and half-life obtained with allometry were greater, 5800- and 145-fold, respectively. Extremely high affinity for alpha1-acid glycoprotein could explain these large prediction errors for this compound. A substantial amount of data and knowledge was added with the predictions. ConclusionDespite challenging compounds and PK, predictions were comparably good. The results further validated ANDROMEDA by Prosilico for human clinical PK-predictions.

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