Back

3D Structure Determination of Protein Complexes using Matrix-Landing Mass Spectrometry

Westphall, M. S.; Lee, K. W.; Salome, A. Z.; Lodge, J.; Grant, T.; Coon, J.

2021-10-13 molecular biology
10.1101/2021.10.13.464253 bioRxiv
Show abstract

Native mass spectrometry (MS) is an emerging technology that can provide complementary data to electron microscopy (EM) for protein structure characterization. Beyond the ability to provide mass measurements of gas-phase biomolecular ions, MS instruments offer the ability to purify, select, and precisely control the spatial location of these ions. Here we present a modified Orbitrap MS system capable of depositing a native MS ion beam onto EM grids. We further describe use of a chemical landing matrix that both preserves and protects the structural integrity of the deposited particles. With this system we obtained the first 3D reconstructed structure of gas-phase, deposited biomolecular ions - the 800 KDa protein complex GroEL. These data provide direct evidence that non-covalent protein complexes can indeed retain their condensed-phase structures following ionization and vaporization. Finally, we describe how further developments of this technology could pave the way to an integrated MS-EM technology with promise to provide improved cryo-EM sample preparation over conventional plunge-freezing techniques.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Analytical Chemistry
218 papers in training set
Top 0.3%
13.1%
2
Journal of the American Chemical Society
217 papers in training set
Top 0.2%
12.1%
3
Journal of the American Society for Mass Spectrometry
37 papers in training set
Top 0.1%
11.2%
4
Angewandte Chemie International Edition
93 papers in training set
Top 0.1%
8.0%
5
Nanoscale Advances
15 papers in training set
Top 0.1%
6.3%
50% of probability mass above
6
Nature Communications
5641 papers in training set
Top 30%
4.5%
7
Nature Methods
385 papers in training set
Top 2%
4.4%
8
ACS Nano
113 papers in training set
Top 0.6%
4.1%
9
ACS Chemical Biology
167 papers in training set
Top 0.8%
3.3%
10
Chemical Communications
25 papers in training set
Top 0.1%
2.8%
11
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 20%
2.7%
12
ACS Central Science
71 papers in training set
Top 0.4%
2.7%
13
Angewandte Chemie
15 papers in training set
Top 0.1%
2.5%
14
Nanoscale
42 papers in training set
Top 0.3%
1.8%
15
Communications Biology
993 papers in training set
Top 20%
1.1%
16
IUCrJ
32 papers in training set
Top 0.2%
1.1%
17
Journal of Proteome Research
234 papers in training set
Top 1%
1.1%
18
Structure
193 papers in training set
Top 2%
0.9%
19
PNAS Nexus
159 papers in training set
Top 3%
0.9%
20
Journal of Structural Biology
64 papers in training set
Top 0.7%
0.9%
21
Scientific Reports
3612 papers in training set
Top 77%
0.6%
22
PLOS ONE
5266 papers in training set
Top 64%
0.6%
23
Nature Biotechnology
172 papers in training set
Top 5%
0.6%