A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina
Guerillot, P.; Kohler, A.; Morin, E.; Louet, C.; Duplessis, S.
Show abstract
Melampsora larici-populina is an obligate biotrophic plant pathogen responsible for the poplar rust disease. This fungus belongs to the taxonomical order Pucciniales and exhibits a complex heteroecious and macrocyclic life cycle, i.e. it has the capacity to infect two unrelated host plants, larch and poplar, and to form five distinct spore types through the year. The M. larici-populina genome has been sequenced and annotated in 2011 and since, different transcriptomic analyses were conducted at different stages with oligoarrays and later on with RNA-Seq covering most of its life cycle. Here, we collected published transcriptome data for the poplar rust fungus, transposed them for the version 2 of the genome now available at the Joint Genome Institute Mycocosm website and performed normalization of different oligoarray datasets on one hand, and of RNA-Seq on the other hand. We report a comprehensive normalized dataset for this fungus, made available for the community, which allows life cycle transcriptomics analysis.
Matching journals
The top 8 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Transcriptome analysis of apple leaves infected by the rust fungus Gymnosporangium yamadae at two sporulation stages (spermogonia and aecia) reveals specific host responses, rust pathogenesis-related genes and a shift in the phyllosphere fungal community composition 96%
- Comparative transcriptomic analysis of Zymoseptoria tritici reveals interaction-specific gene expression patterns during susceptible, resistant, and non-host interactions 94%
- Chromosome-scale genome assembly of Fusarium oxysporum strain Fo47, a fungal endophyte and biocontrol agent 94%
Similar papers in this journal
- A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy 95%
- Identification of novel basil downy mildew resistance genes using de novo comparative transcriptomics 93%
- Transcriptome profiling of Candidatus Liberibacter asiaticus in citrus and psyllids 93%
Similar papers in this journal
- Multiple scenarios for sexual crosses in the fungal pathogen Zymoseptoria tritici on wheat residues: potential consequences for virulence gene transmission 93%
- Transcription factor lineages in plant-pathogenic fungi, connecting diversity with fungal virulence 92%
- Chromosome-level de novo assembly of Coprinopsis cinerea A43mut B43mut pab1-1 #326 and genetic variant identification of mutants using Nanopore MinION sequencing 92%
Similar papers in this journal
Similar papers in this journal
- Genome-wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families 94%
- Impact of a resistance gene against a fungal pathogen on the plant host residue microbiome: the case of the Leptosphaeria maculans-Brassica napus pathosystem 93%
- Spray-Induced Gene Silencing Identifies Pathogen Processes Contributing To Powdery Mildew Proliferation 93%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.