Back

Divergent epigenetic profiles from two differentially impacted wild populationsof estuarine cordgrass (Sporobolus alterniflorus)

DeCarlo, L.; Meckler, F.; Hans, M.; Kelemen, S.; Magun, H.; Noah, M.; Pappajohn, L.; Anderson, N.; Berger, R.; Berkel, J.; Brooke, N.; Chen, L.; Chijioke, O.; Dewees, N.; Faulkner, P.; Frank, J.; Holzman, W.; Marino, V.; Ravaschiere, A.; Wang, Y.; Williams, A.; Williams, Z.; Gentile, D.; Cox, R.

2021-03-22 plant biology
10.1101/2021.03.22.436412 bioRxiv
Show abstract

The effects of urbanization on watershed ecosystems present critical challenges to modern survival. Organisms in urbanized areas experience high rates of evolutionary change, but genetic adaptation alone cannot mitigate the rapid and severe effects of urbanization on biodiversity. Highly resilient, foundation species are key to maintaining an ecosystems integrity in the face of urban stressors. However, the rapid collapse and disappearance of watershed ecosystems calls into question the extent to which we can rely on such species for their services. Our research investigates the molecular mechanisms by which the foundation ecosystems provider, Sporobolus alterniflorus, adapts to life in an urbanized environment. To elucidate these mechanisms, we quantified changes in global DNA methylation (% 5-mC) as a result of acute heat stress. Specimens from two differentially impacted populations across an urban to suburban geographical transect formed the basis of this study. These two populations of Sporobolus alterniflora exhibit inverse global DNA methylation patterns when exposed to the same acute heat stress. Our findings suggest that epigenetic mechanisms, such as DNA methylation, control rapid and transient adaptation, in the form of differential stress responses, to distinct environment challenges. Highlights for manuscript submissionO_LI{blacksquare} estuarine grasses native to the Bronx River, NY face stresses associated with low dissolved oxygen and urbanization C_LIO_LI{blacksquare} differentially impacted populations of estuarine grasses exhibit inverse global DNA methylation profiles in response to acute heat stress C_LIO_LI{blacksquare} DNA methylation may represent a mechanism by which plants transiently respond to environmental stressors, and this may represent a form of rapid adaptive evolution C_LIO_LI{blacksquare} stress priming by transgenerational epigenetic modification may enhance fitness in grasses native to the heavily impacted Bronx River estuary C_LI

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
PLOS ONE
4510 papers in training set
Top 18%
10.4%
2
Frontiers in Plant Science
240 papers in training set
Top 1%
7.4%
3
Evolutionary Applications
91 papers in training set
Top 0.1%
7.4%
4
Molecular Ecology
304 papers in training set
Top 0.9%
6.5%
5
Frontiers in Marine Science
55 papers in training set
Top 0.2%
6.5%
6
AoB PLANTS
11 papers in training set
Top 0.1%
5.0%
7
G3 Genes|Genomes|Genetics
351 papers in training set
Top 0.6%
3.7%
8
Global Change Biology
69 papers in training set
Top 0.5%
3.3%
50% of probability mass above
9
Ecosphere
53 papers in training set
Top 0.1%
2.8%
10
Ecology and Evolution
232 papers in training set
Top 1%
2.7%
11
Science of The Total Environment
179 papers in training set
Top 2%
2.7%
12
Scientific Reports
3102 papers in training set
Top 47%
2.4%
13
Plant Direct
81 papers in training set
Top 0.9%
2.2%
14
PeerJ
261 papers in training set
Top 6%
1.8%
15
Journal of Experimental Biology
249 papers in training set
Top 1%
1.7%
16
American Journal of Botany
41 papers in training set
Top 0.2%
1.4%
17
Frontiers in Genetics
197 papers in training set
Top 7%
1.0%
18
BMC Genomics
328 papers in training set
Top 4%
1.0%
19
G3: Genes, Genomes, Genetics
222 papers in training set
Top 0.7%
0.9%
20
Journal of Biogeography
37 papers in training set
Top 0.2%
0.9%
21
Environmental and Experimental Botany
11 papers in training set
Top 0.6%
0.9%
22
Tree Physiology
21 papers in training set
Top 0.1%
0.9%
23
Environmental Microbiology Reports
27 papers in training set
Top 0.6%
0.8%
24
Environmental Pollution
35 papers in training set
Top 2%
0.8%
25
Developmental Biology
134 papers in training set
Top 2%
0.8%
26
Canadian Journal of Fisheries and Aquatic Sciences
14 papers in training set
Top 0.1%
0.8%
27
Proceedings of the Royal Society B: Biological Sciences
341 papers in training set
Top 6%
0.8%
28
Ecology
70 papers in training set
Top 0.7%
0.8%
29
Evolution Letters
71 papers in training set
Top 2%
0.8%
30
Journal of Ecology
47 papers in training set
Top 0.5%
0.7%