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dsSwissKnife: An R package for federated data analysis

Dragan, I.; Sparso, T.; Kuznetsov, D.; Slieker, R.; Ibberson, M.

2020-11-20 bioinformatics
10.1101/2020.11.17.386813 bioRxiv
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SummarydsSwissKnife is an R package that enables several powerful analyses to be performed on federated datasets. The package works alongside DataSHIELD and extends its functionality. We have developed and implemented dsSwissKnife in a large IMI project on type 2 diabetes, RHAPSODY, where data from 10 observational cohorts have been harmonised and federated in CDISC SDTM format and made available for biomarker discovery. Availability and implementationdsSwissKnife is freely available online at https://github.com/sib-swiss/dsSwissKnife. The package is distributed under the GNU General Public License version 3. Contactmark.ibberson@sib.swiss

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"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.