Back

A Simple Enhancement for Gibson Isothermal Assembly

Rabe, B. A.; Cepko, C.

2020-06-15 molecular biology
10.1101/2020.06.14.150979 bioRxiv
Show abstract

Gibson Isothermal Assembly has become a widespread cloning method, with a multitude of advantages over traditional cut-and-paste cloning. It allows for scarless assembly of multiple fragments simultaneously and has become widely used for molecular cloning. We have found that a simple change to the formulation of the reaction mix, the addition of a single-stranded DNA binding protein, can substantially improve both the accuracy and efficiency of assembly, especially as the number of fragments being assembled increases. In addition, when creating this Enhanced Gibson Isothermal Assembly reaction mix in-house with homemade DNA ligase, the cost of the reaction can be reduced to less than $10 per milliliter.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
PLOS ONE
4510 papers in training set
Top 3%
29.4%
2
Current Protocols
13 papers in training set
Top 0.1%
8.9%
3
Scientific Reports
3102 papers in training set
Top 21%
5.2%
4
ACS Synthetic Biology
256 papers in training set
Top 0.8%
4.2%
5
Nucleic Acids Research
1128 papers in training set
Top 5%
3.8%
50% of probability mass above
6
Biology Methods and Protocols
53 papers in training set
Top 0.4%
2.6%
7
BMC Bioinformatics
383 papers in training set
Top 4%
2.0%
8
Journal of Virology
456 papers in training set
Top 2%
2.0%
9
BMC Genomics
328 papers in training set
Top 2%
2.0%
10
Viruses
318 papers in training set
Top 2%
2.0%
11
Nature Communications
4913 papers in training set
Top 53%
1.6%
12
Frontiers in Microbiology
375 papers in training set
Top 6%
1.6%
13
Journal of Biological Chemistry
641 papers in training set
Top 2%
1.6%
14
Talanta
12 papers in training set
Top 0.4%
1.3%
15
STAR Protocols
15 papers in training set
Top 0.1%
1.2%
16
Eurosurveillance
80 papers in training set
Top 1%
1.0%
17
Journal of Bioinformatics and Systems Biology
14 papers in training set
Top 0.4%
1.0%
18
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 2%
0.9%
19
BMC Methods
11 papers in training set
Top 0.1%
0.9%
20
PeerJ
261 papers in training set
Top 14%
0.8%
21
Communications Biology
886 papers in training set
Top 21%
0.8%
22
Applied and Environmental Microbiology
301 papers in training set
Top 3%
0.8%
23
ACS Omega
90 papers in training set
Top 4%
0.8%
24
Mobile DNA
27 papers in training set
Top 0.3%
0.5%
25
Analytical Biochemistry
26 papers in training set
Top 0.3%
0.5%
26
BioTechniques
24 papers in training set
Top 0.4%
0.5%
27
mBio
750 papers in training set
Top 13%
0.5%