Back

Molecular Dynamics Study of Dehydrated Lipopolysaccharide Membrane

Liu, C.; Elvati, P.; Violi, A.

2020-06-01 biophysics
10.1101/2020.05.31.126326 bioRxiv
Show abstract

The outer membrane of bacteria is known to play an important role in the rapid response to desiccation, although the causes and the extent of these effects are still mostly unclear. For this reason, in this work we study the desiccation response of the Gram-negative lipopolysaccha-ride (LPS) bacterial outer membranes. By analyzing molecular dynamics simulations of LPS membranes of different composition during desiccation, we identified the formation of a rigid protective layer of polysaccharides that not only reduces the water evaporation but is also able to indirectly preserve several structural features and as such membrane functionality. Overall, we found that the presence of polysaccharide layer is critical in the conservation of a layer of water in proximity of the hydrophobic region as well as the structure of the lipids acyl chain structure.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
The Journal of Physical Chemistry B
167 papers in training set
Top 0.1%
27.0%
2
Langmuir
36 papers in training set
Top 0.1%
11.2%
3
Soft Matter
60 papers in training set
Top 0.1%
6.8%
4
Physical Chemistry Chemical Physics
36 papers in training set
Top 0.1%
6.8%
50% of probability mass above
5
Biophysical Journal
631 papers in training set
Top 1%
5.2%
6
Journal of Chemical Theory and Computation
140 papers in training set
Top 0.4%
4.4%
7
Biochimica et Biophysica Acta (BBA) - Biomembranes
36 papers in training set
Top 0.1%
4.4%
8
Journal of Colloid and Interface Science
12 papers in training set
Top 0.1%
3.3%
9
The Journal of Chemical Physics
56 papers in training set
Top 0.3%
2.2%
10
The Journal of Physical Chemistry Letters
63 papers in training set
Top 0.3%
2.2%
11
Scientific Reports
3612 papers in training set
Top 53%
1.8%
12
Journal of Chemical Information and Modeling
238 papers in training set
Top 2%
1.8%
13
Nanoscale
42 papers in training set
Top 0.3%
1.7%
14
International Journal of Molecular Sciences
494 papers in training set
Top 9%
1.5%
15
Nature Communications
5641 papers in training set
Top 49%
1.4%
16
RSC Advances
22 papers in training set
Top 0.6%
1.1%
17
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 34%
1.1%
18
PLOS Computational Biology
1863 papers in training set
Top 17%
1.1%
19
Journal of the American Chemical Society
217 papers in training set
Top 2%
0.9%
20
Biomacromolecules
29 papers in training set
Top 0.5%
0.9%
21
Nanoscale Advances
15 papers in training set
Top 0.4%
0.6%
22
Communications Biology
993 papers in training set
Top 34%
0.6%