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TraIT, Translational research IT bridging the valley of death in translational medicine

Boiten, J.-W.; Azevedo, R.; van Bochove, K.; Cavelaars, M.; Dekker, A.; Fijneman, R. J. A.; Lansberg, P.; van der Linden, W.; Mons, B.; Stathonikos, N.; Verheul, H. M. W.; Beliën, J. A. M.; Meijer, G. A.

2020-05-20 bioinformatics
10.1101/2020.05.18.052563 bioRxiv
Show abstract

Translating new technology and biological findings into clinical applications is hampered by insufficient translational research IT. The Dutch Translational research IT (TraIT) initiative organizes, deploys, and manages data and workflows in an on-line "office suite", supplemented with efficient training and user support. TraIT has been adopted by a wide user community providing an excellent large-scale demonstrator for the nation-wide Health-RI initiative.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
GigaScience
◐ 212 papers in training set
Top 0.1%
22.6%
Similar papers in this journal
2
Database
◐ 61 papers in training set
Top 0.1%
10.0%
Similar papers in this journal
3
PLOS ONE
● 5266 papers in training set
Top 20%
8.1%
Similar papers in this journal
4
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 0.3%
6.9%
Similar papers in this journal
5
Bioinformatics
◐ 1204 papers in training set
Top 5%
3.3%
50% of probability mass above
6
Nucleic Acids Research
◐ 1281 papers in training set
Top 5%
3.3%
Similar papers in this journal
7
International Journal of Molecular Sciences
○ 494 papers in training set
Top 5%
2.5%
8
Scientific Data
○ 209 papers in training set
Top 1%
2.2%
9
BMC Medical Genomics
○ 50 papers in training set
Top 0.4%
2.0%
10
JAMIA Open
◐ 42 papers in training set
Top 1%
1.4%
11
Journal of Biomedical Informatics
○ 47 papers in training set
Top 0.9%
1.4%
12
NAR Genomics and Bioinformatics
◐ 242 papers in training set
Top 3%
1.4%
13
iScience
○ 1154 papers in training set
Top 23%
1.4%
14
Journal of Translational Medicine
○ 57 papers in training set
Top 1%
1.2%
15
Scientific Reports
○ 3612 papers in training set
Top 61%
1.2%
16
Journal of Molecular Biology
○ 232 papers in training set
Top 3%
1.2%
17
Communications Medicine
○ 113 papers in training set
Top 2%
1.2%
18
JMIR Medical Informatics
◐ 18 papers in training set
Top 0.6%
1.1%
19
BMC Research Notes
○ 33 papers in training set
Top 0.9%
1.0%
20
PLOS Digital Health
● 106 papers in training set
Top 4%
1.0%
21
Journal of the American Medical Informatics Association
◐ 71 papers in training set
Top 2%
1.0%
22
Orphanet Journal of Rare Diseases
○ 21 papers in training set
Top 0.5%
1.0%
23
Nature Communications
○ 5641 papers in training set
Top 55%
0.9%
24
Frontiers in Genetics
○ 230 papers in training set
Top 5%
0.9%
25
Frontiers in Medicine
○ 120 papers in training set
Top 4%
0.9%
26
Journal of Personalized Medicine
○ 28 papers in training set
Top 1%
0.9%
27
PROTEOMICS
○ 43 papers in training set
Top 0.7%
0.9%
28
Disease Models & Mechanisms
139 papers in training set
Top 3%
0.6%
29
PLOS Computational Biology
● 1863 papers in training set
Top 21%
0.6%
30
Frontiers in Bioengineering and Biotechnology
○ 98 papers in training set
Top 3%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.