Back

Statistical analysis of no observed effect concentrations or levels in eco-toxicological assays with overdispersed count endpoints

Hothorn, L. A.; Kluxen, F. M.

2020-01-15 pharmacology and toxicology
10.1101/2020.01.15.907881 bioRxiv
Show abstract

In (eco-)toxicological hazard characterization, the No Observed Adverse Effect Concentration or Level (NOAEC or NOAEL) approach is used and often required despite of its known limitations. For count data, statistical testing can be challenging, due to several confounding factors, such as zero inflation, low observation numbers, variance heterogeneity, over- or under-dispersion when applying the Poisson model or hierarchical experimental designs. As several tests are available for count data, we selected sixteen tests suitable for overdispersed counts and compared them in a simulation study. We assessed their performance considering data sets containing mixing distribution and over-dispersion with different observation numbers. It shows that there is no uniformly best approach because the assumed data conditions and assumptions are very different. However, the Dunnett-type procedure based on most likely transformation can be recommended, because of its size and power behavior, which is relatively better over most data conditions as compared to the available alternative test methods, and because it allows flexible modeling and effect sizes can be estimated by confidence intervals. Related R-code is provided for real data examples.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
PLOS ONE
5266 papers in training set
Top 4%
32.0%
2
Scientific Reports
3612 papers in training set
Top 6%
8.1%
3
Frontiers in Pharmacology
111 papers in training set
Top 0.2%
7.5%
4
Science of The Total Environment
186 papers in training set
Top 0.9%
4.5%
50% of probability mass above
5
Peer Community Journal
281 papers in training set
Top 1%
4.2%
6
MethodsX
16 papers in training set
Top 0.1%
3.5%
7
Archives of Toxicology
18 papers in training set
Top 0.1%
3.3%
8
Environment International
43 papers in training set
Top 0.3%
3.3%
9
Molecules
39 papers in training set
Top 0.3%
2.7%
10
PLOS Computational Biology
1863 papers in training set
Top 11%
2.5%
11
Toxicological Sciences
41 papers in training set
Top 0.2%
2.5%
12
Chemical Research in Toxicology
10 papers in training set
Top 0.1%
1.8%
13
Environmental Science & Technology
64 papers in training set
Top 0.7%
1.5%
14
Ecotoxicology and Environmental Safety
10 papers in training set
Top 0.2%
1.2%
15
Artificial Intelligence in the Life Sciences
13 papers in training set
Top 0.2%
1.0%
16
ACS Omega
105 papers in training set
Top 3%
1.0%
17
RSC Advances
22 papers in training set
Top 0.7%
1.0%
18
Human Genomics
21 papers in training set
Top 0.3%
1.0%
19
Biomedicines
67 papers in training set
Top 2%
0.9%
20
International Journal of Molecular Sciences
494 papers in training set
Top 14%
0.9%
21
BMC Research Notes
33 papers in training set
Top 1%
0.9%
22
Malaria Journal
58 papers in training set
Top 1.0%
0.6%